Gene : Carub.0005s2473 C. rubella v1.1
Defline:  (1 of 3) PTHR10024//PTHR10024:SF243 - SYNAPTOTAGMIN // ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE-LIKE PROTEIN Genomic Order:  2473
Name:  ? Carub.0005s2473 Secondary Identifier:  ? PAC:39226237
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0005s2473 0.5kb upstream 0.5kb upstream 4277 true scaffold_5: 11714409-11718685 Capsella rubella
Carub.0005s2473 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 11718186-11718685 Capsella rubella
Carub.0005s2473 0.5kb downstream 0.5kb downstream 4277 true scaffold_5: 11713909-11718185 Capsella rubella
Carub.0005s2473 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 11713909-11714408 Capsella rubella
Carub.0005s2473 1.0kb upstream 1.0kb upstream 4777 true scaffold_5: 11714409-11719185 Capsella rubella
Carub.0005s2473 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 11718186-11719185 Capsella rubella
Carub.0005s2473 1.0kb downstream 1.0kb downstream 4777 true scaffold_5: 11713409-11718185 Capsella rubella
Carub.0005s2473 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 11713409-11714408 Capsella rubella
Carub.0005s2473 2.0kb upstream 2.0kb upstream 5777 true scaffold_5: 11714409-11720185 Capsella rubella
Carub.0005s2473 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 11718186-11720185 Capsella rubella
Carub.0005s2473 2.0kb downstream 2.0kb downstream 5777 true scaffold_5: 11712409-11718185 Capsella rubella
Carub.0005s2473 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 11712409-11714408 Capsella rubella
Carub.0005s2473 5.0kb upstream 5.0kb upstream 8777 true scaffold_5: 11714409-11723185 Capsella rubella
Carub.0005s2473 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 11718186-11723185 Capsella rubella
Carub.0005s2473 5.0kb downstream 5.0kb downstream 8777 true scaffold_5: 11709409-11718185 Capsella rubella
Carub.0005s2473 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 11709409-11714408 Capsella rubella
Carub.0005s2473 10.0kb upstream 10.0kb upstream 13777 true scaffold_5: 11714409-11728185 Capsella rubella
Carub.0005s2473 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 11718186-11728185 Capsella rubella
Carub.0005s2473 10.0kb downstream 10.0kb downstream 13777 true scaffold_5: 11704409-11718185 Capsella rubella
Carub.0005s2473 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 11704409-11714408 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373884 5261 Brassicaceae View MSA
123834944 5264 Brassicales-Malvales View MSA
124339252 5266 SBM View MSA
124251050 5268 Malvidae View MSA
124067885 5270 Rosid View MSA
123751578 5271 Pentapetalae View MSA
122793897 5272 Eudicot View MSA
122046174 5273 Angiosperm View MSA
121350979 5274 Embryophyte View MSA
123427289 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain