Gene : Carub.0005s2287 C. rubella v1.1
Defline:  (1 of 1) PTHR23245//PTHR23245:SF36 - UNCHARACTERIZED // TRNA (GUANINE(37)-N1)-METHYLTRANSFERASE Genomic Order:  2287
Name:  ? Carub.0005s2287 Secondary Identifier:  ? PAC:39224690
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-6829 Capsella rubella pathologic  
Crubella PWY-7286 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0005s2287 0.5kb upstream 0.5kb upstream 4035 true scaffold_5: 11050349-11054383 Capsella rubella
Carub.0005s2287 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 11050349-11050848 Capsella rubella
Carub.0005s2287 0.5kb downstream 0.5kb downstream 4035 true scaffold_5: 11050849-11054883 Capsella rubella
Carub.0005s2287 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 11054384-11054883 Capsella rubella
Carub.0005s2287 1.0kb upstream 1.0kb upstream 4535 true scaffold_5: 11049849-11054383 Capsella rubella
Carub.0005s2287 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 11049849-11050848 Capsella rubella
Carub.0005s2287 1.0kb downstream 1.0kb downstream 4535 true scaffold_5: 11050849-11055383 Capsella rubella
Carub.0005s2287 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 11054384-11055383 Capsella rubella
Carub.0005s2287 2.0kb upstream 2.0kb upstream 5535 true scaffold_5: 11048849-11054383 Capsella rubella
Carub.0005s2287 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 11048849-11050848 Capsella rubella
Carub.0005s2287 2.0kb downstream 2.0kb downstream 5535 true scaffold_5: 11050849-11056383 Capsella rubella
Carub.0005s2287 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 11054384-11056383 Capsella rubella
Carub.0005s2287 5.0kb upstream 5.0kb upstream 8535 true scaffold_5: 11045849-11054383 Capsella rubella
Carub.0005s2287 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 11045849-11050848 Capsella rubella
Carub.0005s2287 5.0kb downstream 5.0kb downstream 8535 true scaffold_5: 11050849-11059383 Capsella rubella
Carub.0005s2287 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 11054384-11059383 Capsella rubella
Carub.0005s2287 10.0kb upstream 10.0kb upstream 13535 true scaffold_5: 11040849-11054383 Capsella rubella
Carub.0005s2287 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 11040849-11050848 Capsella rubella
Carub.0005s2287 10.0kb downstream 10.0kb downstream 13535 true scaffold_5: 11050849-11064383 Capsella rubella
Carub.0005s2287 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 11054384-11064383 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122334691 5261 Brassicaceae Singleton cluster - no MSA
123775504 5264 Brassicales-Malvales Singleton cluster - no MSA
124273912 5266 SBM Singleton cluster - no MSA
124129447 5268 Malvidae Singleton cluster - no MSA
124073928 5270 Rosid View MSA
123747956 5271 Pentapetalae View MSA
122788813 5272 Eudicot View MSA
122045692 5273 Angiosperm View MSA
121347346 5274 Embryophyte View MSA
123426085 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain