Gene : Carub.0005s2309 C. rubella v1.1
Defline:  (1 of 3) K07407 - alpha-galactosidase (E3.2.1.22B, galA, rafA) Genomic Order:  2309
Name:  ? Carub.0005s2309 Secondary Identifier:  ? PAC:39225445
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY0-1301 Capsella rubella pathologic  
Crubella PWY-6527 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0005s2309 0.5kb upstream 0.5kb upstream 3608 true scaffold_5: 11123467-11127074 Capsella rubella
Carub.0005s2309 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 11123467-11123966 Capsella rubella
Carub.0005s2309 0.5kb downstream 0.5kb downstream 3608 true scaffold_5: 11123967-11127574 Capsella rubella
Carub.0005s2309 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 11127075-11127574 Capsella rubella
Carub.0005s2309 1.0kb upstream 1.0kb upstream 4108 true scaffold_5: 11122967-11127074 Capsella rubella
Carub.0005s2309 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 11122967-11123966 Capsella rubella
Carub.0005s2309 1.0kb downstream 1.0kb downstream 4108 true scaffold_5: 11123967-11128074 Capsella rubella
Carub.0005s2309 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 11127075-11128074 Capsella rubella
Carub.0005s2309 2.0kb upstream 2.0kb upstream 5108 true scaffold_5: 11121967-11127074 Capsella rubella
Carub.0005s2309 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 11121967-11123966 Capsella rubella
Carub.0005s2309 2.0kb downstream 2.0kb downstream 5108 true scaffold_5: 11123967-11129074 Capsella rubella
Carub.0005s2309 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 11127075-11129074 Capsella rubella
Carub.0005s2309 5.0kb upstream 5.0kb upstream 8108 true scaffold_5: 11118967-11127074 Capsella rubella
Carub.0005s2309 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 11118967-11123966 Capsella rubella
Carub.0005s2309 5.0kb downstream 5.0kb downstream 8108 true scaffold_5: 11123967-11132074 Capsella rubella
Carub.0005s2309 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 11127075-11132074 Capsella rubella
Carub.0005s2309 10.0kb upstream 10.0kb upstream 13108 true scaffold_5: 11113967-11127074 Capsella rubella
Carub.0005s2309 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 11113967-11123966 Capsella rubella
Carub.0005s2309 10.0kb downstream 10.0kb downstream 13108 true scaffold_5: 11123967-11137074 Capsella rubella
Carub.0005s2309 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 11127075-11137074 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368440 5261 Brassicaceae View MSA
123828305 5264 Brassicales-Malvales View MSA
124349365 5266 SBM View MSA
124247152 5268 Malvidae View MSA
124073438 5270 Rosid View MSA
123749303 5271 Pentapetalae View MSA
122796981 5272 Eudicot View MSA
122048958 5273 Angiosperm View MSA
121347217 5274 Embryophyte View MSA
123428348 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain