Gene : Carub.0005s2308 C. rubella v1.1
Defline:  (1 of 6) K01883 - cysteinyl-tRNA synthetase (CARS, cysS) Genomic Order:  2308
Name:  ? Carub.0005s2308 Secondary Identifier:  ? PAC:39226643
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella TRNA-CHARGING-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0005s2308 0.5kb upstream 0.5kb upstream 2957 true scaffold_5: 11120546-11123502 Capsella rubella
Carub.0005s2308 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 11120546-11121045 Capsella rubella
Carub.0005s2308 0.5kb downstream 0.5kb downstream 2957 true scaffold_5: 11121046-11124002 Capsella rubella
Carub.0005s2308 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 11123503-11124002 Capsella rubella
Carub.0005s2308 1.0kb upstream 1.0kb upstream 3457 true scaffold_5: 11120046-11123502 Capsella rubella
Carub.0005s2308 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 11120046-11121045 Capsella rubella
Carub.0005s2308 1.0kb downstream 1.0kb downstream 3457 true scaffold_5: 11121046-11124502 Capsella rubella
Carub.0005s2308 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 11123503-11124502 Capsella rubella
Carub.0005s2308 2.0kb upstream 2.0kb upstream 4457 true scaffold_5: 11119046-11123502 Capsella rubella
Carub.0005s2308 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 11119046-11121045 Capsella rubella
Carub.0005s2308 2.0kb downstream 2.0kb downstream 4457 true scaffold_5: 11121046-11125502 Capsella rubella
Carub.0005s2308 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 11123503-11125502 Capsella rubella
Carub.0005s2308 5.0kb upstream 5.0kb upstream 7457 true scaffold_5: 11116046-11123502 Capsella rubella
Carub.0005s2308 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 11116046-11121045 Capsella rubella
Carub.0005s2308 5.0kb downstream 5.0kb downstream 7457 true scaffold_5: 11121046-11128502 Capsella rubella
Carub.0005s2308 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 11123503-11128502 Capsella rubella
Carub.0005s2308 10.0kb upstream 10.0kb upstream 12457 true scaffold_5: 11111046-11123502 Capsella rubella
Carub.0005s2308 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 11111046-11121045 Capsella rubella
Carub.0005s2308 10.0kb downstream 10.0kb downstream 12457 true scaffold_5: 11121046-11133502 Capsella rubella
Carub.0005s2308 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 11123503-11133502 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381714 5261 Brassicaceae View MSA
123803392 5264 Brassicales-Malvales View MSA
124300505 5266 SBM View MSA
124250049 5268 Malvidae View MSA
124063129 5270 Rosid View MSA
123736819 5271 Pentapetalae View MSA
122791424 5272 Eudicot View MSA
122050932 5273 Angiosperm View MSA
121350340 5274 Embryophyte View MSA
123427761 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain