Gene : Carub.0001s4386 C. rubella v1.1
Defline:  (1 of 1) 3.4.22.54 - Calpain-3 / Muscle-specific calcium-activated neutral protease 3 Genomic Order:  4386
Name:  ? Carub.0001s4386 Secondary Identifier:  ? PAC:39229926
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s4386 0.5kb upstream 0.5kb upstream 11748 true scaffold_1: 19200566-19212313 Capsella rubella
Carub.0001s4386 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 19211814-19212313 Capsella rubella
Carub.0001s4386 0.5kb downstream 0.5kb downstream 11748 true scaffold_1: 19200066-19211813 Capsella rubella
Carub.0001s4386 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 19200066-19200565 Capsella rubella
Carub.0001s4386 1.0kb upstream 1.0kb upstream 12248 true scaffold_1: 19200566-19212813 Capsella rubella
Carub.0001s4386 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 19211814-19212813 Capsella rubella
Carub.0001s4386 1.0kb downstream 1.0kb downstream 12248 true scaffold_1: 19199566-19211813 Capsella rubella
Carub.0001s4386 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 19199566-19200565 Capsella rubella
Carub.0001s4386 2.0kb upstream 2.0kb upstream 13248 true scaffold_1: 19200566-19213813 Capsella rubella
Carub.0001s4386 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 19211814-19213813 Capsella rubella
Carub.0001s4386 2.0kb downstream 2.0kb downstream 13248 true scaffold_1: 19198566-19211813 Capsella rubella
Carub.0001s4386 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 19198566-19200565 Capsella rubella
Carub.0001s4386 5.0kb upstream 5.0kb upstream 16248 true scaffold_1: 19200566-19216813 Capsella rubella
Carub.0001s4386 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 19211814-19216813 Capsella rubella
Carub.0001s4386 5.0kb downstream 5.0kb downstream 16248 true scaffold_1: 19195566-19211813 Capsella rubella
Carub.0001s4386 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 19195566-19200565 Capsella rubella
Carub.0001s4386 10.0kb upstream 10.0kb upstream 21248 true scaffold_1: 19200566-19221813 Capsella rubella
Carub.0001s4386 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 19211814-19221813 Capsella rubella
Carub.0001s4386 10.0kb downstream 10.0kb downstream 21248 true scaffold_1: 19190566-19211813 Capsella rubella
Carub.0001s4386 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 19190566-19200565 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372881 5261 Brassicaceae View MSA
123834499 5264 Brassicales-Malvales View MSA
124339874 5266 SBM View MSA
124238685 5268 Malvidae View MSA
124067858 5270 Rosid View MSA
123739465 5271 Pentapetalae View MSA
122788693 5272 Eudicot View MSA
122043542 5273 Angiosperm View MSA
121345747 5274 Embryophyte View MSA
123380263 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain