Gene : Carub.0001s4403 C. rubella v1.1
Defline:  (1 of 4) PTHR22763//PTHR22763:SF59 - RING ZINC FINGER PROTEIN // GENOMIC DNA, CHROMOSOME 3, P1 CLONE: MRP15 Genomic Order:  4403
Name:  ? Carub.0001s4403 Secondary Identifier:  ? PAC:39227005
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-7511 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s4403 0.5kb upstream 0.5kb upstream 2528 true scaffold_1: 19284234-19286761 Capsella rubella
Carub.0001s4403 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 19286262-19286761 Capsella rubella
Carub.0001s4403 0.5kb downstream 0.5kb downstream 2528 true scaffold_1: 19283734-19286261 Capsella rubella
Carub.0001s4403 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 19283734-19284233 Capsella rubella
Carub.0001s4403 1.0kb upstream 1.0kb upstream 3028 true scaffold_1: 19284234-19287261 Capsella rubella
Carub.0001s4403 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 19286262-19287261 Capsella rubella
Carub.0001s4403 1.0kb downstream 1.0kb downstream 3028 true scaffold_1: 19283234-19286261 Capsella rubella
Carub.0001s4403 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 19283234-19284233 Capsella rubella
Carub.0001s4403 2.0kb upstream 2.0kb upstream 4028 true scaffold_1: 19284234-19288261 Capsella rubella
Carub.0001s4403 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 19286262-19288261 Capsella rubella
Carub.0001s4403 2.0kb downstream 2.0kb downstream 4028 true scaffold_1: 19282234-19286261 Capsella rubella
Carub.0001s4403 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 19282234-19284233 Capsella rubella
Carub.0001s4403 5.0kb upstream 5.0kb upstream 7028 true scaffold_1: 19284234-19291261 Capsella rubella
Carub.0001s4403 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 19286262-19291261 Capsella rubella
Carub.0001s4403 5.0kb downstream 5.0kb downstream 7028 true scaffold_1: 19279234-19286261 Capsella rubella
Carub.0001s4403 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 19279234-19284233 Capsella rubella
Carub.0001s4403 10.0kb upstream 10.0kb upstream 12028 true scaffold_1: 19284234-19296261 Capsella rubella
Carub.0001s4403 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 19286262-19296261 Capsella rubella
Carub.0001s4403 10.0kb downstream 10.0kb downstream 12028 true scaffold_1: 19274234-19286261 Capsella rubella
Carub.0001s4403 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 19274234-19284233 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375687 5261 Brassicaceae View MSA
123801026 5264 Brassicales-Malvales View MSA
124298373 5266 SBM View MSA
124150029 5268 Malvidae View MSA
124061654 5270 Rosid View MSA
123753393 5271 Pentapetalae View MSA
122788391 5272 Eudicot View MSA
122050385 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121349521 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain