Gene : Carub.0001s4176 C. rubella v1.1
Defline:  (1 of 3) PTHR10655//PTHR10655:SF34 - LYSOPHOSPHOLIPASE-RELATED // SUBFAMILY NOT NAMED Genomic Order:  4176
Name:  ? Carub.0001s4176 Secondary Identifier:  ? PAC:39228942
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-7409 Capsella rubella pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s4176 0.5kb upstream 0.5kb upstream 3432 true scaffold_1: 18424749-18428180 Capsella rubella
Carub.0001s4176 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 18427681-18428180 Capsella rubella
Carub.0001s4176 0.5kb downstream 0.5kb downstream 3432 true scaffold_1: 18424249-18427680 Capsella rubella
Carub.0001s4176 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 18424249-18424748 Capsella rubella
Carub.0001s4176 1.0kb upstream 1.0kb upstream 3932 true scaffold_1: 18424749-18428680 Capsella rubella
Carub.0001s4176 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 18427681-18428680 Capsella rubella
Carub.0001s4176 1.0kb downstream 1.0kb downstream 3932 true scaffold_1: 18423749-18427680 Capsella rubella
Carub.0001s4176 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 18423749-18424748 Capsella rubella
Carub.0001s4176 2.0kb upstream 2.0kb upstream 4932 true scaffold_1: 18424749-18429680 Capsella rubella
Carub.0001s4176 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 18427681-18429680 Capsella rubella
Carub.0001s4176 2.0kb downstream 2.0kb downstream 4932 true scaffold_1: 18422749-18427680 Capsella rubella
Carub.0001s4176 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 18422749-18424748 Capsella rubella
Carub.0001s4176 5.0kb upstream 5.0kb upstream 7932 true scaffold_1: 18424749-18432680 Capsella rubella
Carub.0001s4176 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 18427681-18432680 Capsella rubella
Carub.0001s4176 5.0kb downstream 5.0kb downstream 7932 true scaffold_1: 18419749-18427680 Capsella rubella
Carub.0001s4176 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 18419749-18424748 Capsella rubella
Carub.0001s4176 10.0kb upstream 10.0kb upstream 12932 true scaffold_1: 18424749-18437680 Capsella rubella
Carub.0001s4176 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 18427681-18437680 Capsella rubella
Carub.0001s4176 10.0kb downstream 10.0kb downstream 12932 true scaffold_1: 18414749-18427680 Capsella rubella
Carub.0001s4176 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 18414749-18424748 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380548 5261 Brassicaceae View MSA
123836615 5264 Brassicales-Malvales View MSA
124338971 5266 SBM View MSA
124245146 5268 Malvidae View MSA
124070848 5270 Rosid View MSA
123747021 5271 Pentapetalae View MSA
122795492 5272 Eudicot View MSA
122046747 5273 Angiosperm View MSA
121349351 5274 Embryophyte View MSA
123428773 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain