Gene : Carub.0001s4242 C. rubella v1.1
Defline:  (1 of 4) K00026 - malate dehydrogenase (MDH2) Genomic Order:  4242
Name:  ? Carub.0001s4242 Secondary Identifier:  ? PAC:39228121
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Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella GLUCONEO-PWY Capsella rubella pathologic  
Crubella GLYOXYLATE-BYPASS Capsella rubella pathologic  
Crubella PWY-5464 Capsella rubella pathologic  
Crubella PWY-561 Capsella rubella pathologic  
Crubella PWY-5690 Capsella rubella pathologic  
Crubella PWY66-399 Capsella rubella pathologic  
Crubella PWY-7115 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s4242 0.5kb upstream 0.5kb upstream 2705 true scaffold_1: 18679448-18682152 Capsella rubella
Carub.0001s4242 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 18681653-18682152 Capsella rubella
Carub.0001s4242 0.5kb downstream 0.5kb downstream 2705 true scaffold_1: 18678948-18681652 Capsella rubella
Carub.0001s4242 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 18678948-18679447 Capsella rubella
Carub.0001s4242 1.0kb upstream 1.0kb upstream 3205 true scaffold_1: 18679448-18682652 Capsella rubella
Carub.0001s4242 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 18681653-18682652 Capsella rubella
Carub.0001s4242 1.0kb downstream 1.0kb downstream 3205 true scaffold_1: 18678448-18681652 Capsella rubella
Carub.0001s4242 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 18678448-18679447 Capsella rubella
Carub.0001s4242 2.0kb upstream 2.0kb upstream 4205 true scaffold_1: 18679448-18683652 Capsella rubella
Carub.0001s4242 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 18681653-18683652 Capsella rubella
Carub.0001s4242 2.0kb downstream 2.0kb downstream 4205 true scaffold_1: 18677448-18681652 Capsella rubella
Carub.0001s4242 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 18677448-18679447 Capsella rubella
Carub.0001s4242 5.0kb upstream 5.0kb upstream 7205 true scaffold_1: 18679448-18686652 Capsella rubella
Carub.0001s4242 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 18681653-18686652 Capsella rubella
Carub.0001s4242 5.0kb downstream 5.0kb downstream 7205 true scaffold_1: 18674448-18681652 Capsella rubella
Carub.0001s4242 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 18674448-18679447 Capsella rubella
Carub.0001s4242 10.0kb upstream 10.0kb upstream 12205 true scaffold_1: 18679448-18691652 Capsella rubella
Carub.0001s4242 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 18681653-18691652 Capsella rubella
Carub.0001s4242 10.0kb downstream 10.0kb downstream 12205 true scaffold_1: 18669448-18681652 Capsella rubella
Carub.0001s4242 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 18669448-18679447 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375905 5261 Brassicaceae View MSA
123840380 5264 Brassicales-Malvales View MSA
124342947 5266 SBM View MSA
124249329 5268 Malvidae View MSA
124072115 5270 Rosid View MSA
123744980 5271 Pentapetalae View MSA
122794194 5272 Eudicot View MSA
122042635 5273 Angiosperm View MSA
121345492 5274 Embryophyte View MSA
123423974 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain