Gene : Carub.0001s4091 C. rubella v1.1
Defline:  (1 of 3) PTHR12161//PTHR12161:SF18 - UNCHARACTERIZED DUF292 // REGULATOR OF VPS4 ACTIVITY IN THE MVB PATHWAY PROTEIN Genomic Order:  4091
Name:  ? Carub.0001s4091 Secondary Identifier:  ? PAC:39231697
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s4091 0.5kb upstream 0.5kb upstream 1962 true scaffold_1: 18056542-18058503 Capsella rubella
Carub.0001s4091 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 18056542-18057041 Capsella rubella
Carub.0001s4091 0.5kb downstream 0.5kb downstream 1962 true scaffold_1: 18057042-18059003 Capsella rubella
Carub.0001s4091 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 18058504-18059003 Capsella rubella
Carub.0001s4091 1.0kb upstream 1.0kb upstream 2462 true scaffold_1: 18056042-18058503 Capsella rubella
Carub.0001s4091 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 18056042-18057041 Capsella rubella
Carub.0001s4091 1.0kb downstream 1.0kb downstream 2462 true scaffold_1: 18057042-18059503 Capsella rubella
Carub.0001s4091 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 18058504-18059503 Capsella rubella
Carub.0001s4091 2.0kb upstream 2.0kb upstream 3462 true scaffold_1: 18055042-18058503 Capsella rubella
Carub.0001s4091 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 18055042-18057041 Capsella rubella
Carub.0001s4091 2.0kb downstream 2.0kb downstream 3462 true scaffold_1: 18057042-18060503 Capsella rubella
Carub.0001s4091 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 18058504-18060503 Capsella rubella
Carub.0001s4091 5.0kb upstream 5.0kb upstream 6462 true scaffold_1: 18052042-18058503 Capsella rubella
Carub.0001s4091 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 18052042-18057041 Capsella rubella
Carub.0001s4091 5.0kb downstream 5.0kb downstream 6462 true scaffold_1: 18057042-18063503 Capsella rubella
Carub.0001s4091 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 18058504-18063503 Capsella rubella
Carub.0001s4091 10.0kb upstream 10.0kb upstream 11462 true scaffold_1: 18047042-18058503 Capsella rubella
Carub.0001s4091 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 18047042-18057041 Capsella rubella
Carub.0001s4091 10.0kb downstream 10.0kb downstream 11462 true scaffold_1: 18057042-18068503 Capsella rubella
Carub.0001s4091 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 18058504-18068503 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122337328 5261 Brassicaceae View MSA
123842977 5264 Brassicales-Malvales View MSA
124323907 5266 SBM View MSA
124254713 5268 Malvidae View MSA
124073435 5270 Rosid View MSA
123752989 5271 Pentapetalae View MSA
122793014 5272 Eudicot View MSA
122045384 5273 Angiosperm View MSA
121350449 5274 Embryophyte View MSA
123424640 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain