Gene : Carub.0001s4311 C. rubella v1.1
Defline:  (1 of 2) PTHR31707//PTHR31707:SF55 - FAMILY NOT NAMED // PECTINESTERASE 2-RELATED Genomic Order:  4311
Name:  ? Carub.0001s4311 Secondary Identifier:  ? PAC:39228165
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-1081 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s4311 0.5kb upstream 0.5kb upstream 2961 true scaffold_1: 18937696-18940656 Capsella rubella
Carub.0001s4311 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 18937696-18938195 Capsella rubella
Carub.0001s4311 0.5kb downstream 0.5kb downstream 2961 true scaffold_1: 18938196-18941156 Capsella rubella
Carub.0001s4311 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 18940657-18941156 Capsella rubella
Carub.0001s4311 1.0kb upstream 1.0kb upstream 3461 true scaffold_1: 18937196-18940656 Capsella rubella
Carub.0001s4311 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 18937196-18938195 Capsella rubella
Carub.0001s4311 1.0kb downstream 1.0kb downstream 3461 true scaffold_1: 18938196-18941656 Capsella rubella
Carub.0001s4311 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 18940657-18941656 Capsella rubella
Carub.0001s4311 2.0kb upstream 2.0kb upstream 4461 true scaffold_1: 18936196-18940656 Capsella rubella
Carub.0001s4311 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 18936196-18938195 Capsella rubella
Carub.0001s4311 2.0kb downstream 2.0kb downstream 4461 true scaffold_1: 18938196-18942656 Capsella rubella
Carub.0001s4311 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 18940657-18942656 Capsella rubella
Carub.0001s4311 5.0kb upstream 5.0kb upstream 7461 true scaffold_1: 18933196-18940656 Capsella rubella
Carub.0001s4311 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 18933196-18938195 Capsella rubella
Carub.0001s4311 5.0kb downstream 5.0kb downstream 7461 true scaffold_1: 18938196-18945656 Capsella rubella
Carub.0001s4311 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 18940657-18945656 Capsella rubella
Carub.0001s4311 10.0kb upstream 10.0kb upstream 12461 true scaffold_1: 18928196-18940656 Capsella rubella
Carub.0001s4311 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 18928196-18938195 Capsella rubella
Carub.0001s4311 10.0kb downstream 10.0kb downstream 12461 true scaffold_1: 18938196-18950656 Capsella rubella
Carub.0001s4311 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 18940657-18950656 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365332 5261 Brassicaceae View MSA
123841223 5264 Brassicales-Malvales View MSA
124350468 5266 SBM View MSA
124246887 5268 Malvidae View MSA
124060766 5270 Rosid View MSA
123741705 5271 Pentapetalae View MSA
122792272 5272 Eudicot View MSA
122051530 5273 Angiosperm View MSA
121350573 5274 Embryophyte View MSA
123381802 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain