Gene : Carub.0001s4347 C. rubella v1.1
Defline:  (1 of 2) PTHR23151//PTHR23151:SF59 - DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED // SUBFAMILY NOT NAMED Genomic Order:  4347
Name:  ? Carub.0001s4347 Secondary Identifier:  ? PAC:39228321
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-5173 Capsella rubella pathologic  
Crubella PWY-5464 Capsella rubella pathologic  
Crubella PYRUVDEHYD-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s4347 0.5kb upstream 0.5kb upstream 4791 true scaffold_1: 19066234-19071024 Capsella rubella
Carub.0001s4347 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 19070525-19071024 Capsella rubella
Carub.0001s4347 0.5kb downstream 0.5kb downstream 4791 true scaffold_1: 19065734-19070524 Capsella rubella
Carub.0001s4347 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 19065734-19066233 Capsella rubella
Carub.0001s4347 1.0kb upstream 1.0kb upstream 5291 true scaffold_1: 19066234-19071524 Capsella rubella
Carub.0001s4347 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 19070525-19071524 Capsella rubella
Carub.0001s4347 1.0kb downstream 1.0kb downstream 5291 true scaffold_1: 19065234-19070524 Capsella rubella
Carub.0001s4347 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 19065234-19066233 Capsella rubella
Carub.0001s4347 2.0kb upstream 2.0kb upstream 6291 true scaffold_1: 19066234-19072524 Capsella rubella
Carub.0001s4347 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 19070525-19072524 Capsella rubella
Carub.0001s4347 2.0kb downstream 2.0kb downstream 6291 true scaffold_1: 19064234-19070524 Capsella rubella
Carub.0001s4347 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 19064234-19066233 Capsella rubella
Carub.0001s4347 5.0kb upstream 5.0kb upstream 9291 true scaffold_1: 19066234-19075524 Capsella rubella
Carub.0001s4347 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 19070525-19075524 Capsella rubella
Carub.0001s4347 5.0kb downstream 5.0kb downstream 9291 true scaffold_1: 19061234-19070524 Capsella rubella
Carub.0001s4347 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 19061234-19066233 Capsella rubella
Carub.0001s4347 10.0kb upstream 10.0kb upstream 14291 true scaffold_1: 19066234-19080524 Capsella rubella
Carub.0001s4347 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 19070525-19080524 Capsella rubella
Carub.0001s4347 10.0kb downstream 10.0kb downstream 14291 true scaffold_1: 19056234-19070524 Capsella rubella
Carub.0001s4347 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 19056234-19066233 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372168 5261 Brassicaceae View MSA
123835606 5264 Brassicales-Malvales View MSA
124344538 5266 SBM View MSA
124243608 5268 Malvidae View MSA
124061053 5270 Rosid View MSA
123739083 5271 Pentapetalae View MSA
122788575 5272 Eudicot View MSA
122043289 5273 Angiosperm View MSA
121343868 5274 Embryophyte View MSA
123426306 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain