Gene : Carub.0001s4368 C. rubella v1.1
Defline:  (1 of 1) PTHR18896//PTHR18896:SF79 - PHOSPHOLIPASE D // PHOSPHOLIPASE D EPSILON Genomic Order:  4368
Name:  ? Carub.0001s4368 Secondary Identifier:  ? PAC:39229124
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella LIPASYN-PWY Capsella rubella pathologic  
Crubella PWY-3561 Capsella rubella pathologic  
Crubella PWY-7039 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s4368 0.5kb upstream 0.5kb upstream 3061 true scaffold_1: 19133040-19136100 Capsella rubella
Carub.0001s4368 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 19135601-19136100 Capsella rubella
Carub.0001s4368 0.5kb downstream 0.5kb downstream 3061 true scaffold_1: 19132540-19135600 Capsella rubella
Carub.0001s4368 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 19132540-19133039 Capsella rubella
Carub.0001s4368 1.0kb upstream 1.0kb upstream 3561 true scaffold_1: 19133040-19136600 Capsella rubella
Carub.0001s4368 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 19135601-19136600 Capsella rubella
Carub.0001s4368 1.0kb downstream 1.0kb downstream 3561 true scaffold_1: 19132040-19135600 Capsella rubella
Carub.0001s4368 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 19132040-19133039 Capsella rubella
Carub.0001s4368 2.0kb upstream 2.0kb upstream 4561 true scaffold_1: 19133040-19137600 Capsella rubella
Carub.0001s4368 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 19135601-19137600 Capsella rubella
Carub.0001s4368 2.0kb downstream 2.0kb downstream 4561 true scaffold_1: 19131040-19135600 Capsella rubella
Carub.0001s4368 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 19131040-19133039 Capsella rubella
Carub.0001s4368 5.0kb upstream 5.0kb upstream 7561 true scaffold_1: 19133040-19140600 Capsella rubella
Carub.0001s4368 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 19135601-19140600 Capsella rubella
Carub.0001s4368 5.0kb downstream 5.0kb downstream 7561 true scaffold_1: 19128040-19135600 Capsella rubella
Carub.0001s4368 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 19128040-19133039 Capsella rubella
Carub.0001s4368 10.0kb upstream 10.0kb upstream 12561 true scaffold_1: 19133040-19145600 Capsella rubella
Carub.0001s4368 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 19135601-19145600 Capsella rubella
Carub.0001s4368 10.0kb downstream 10.0kb downstream 12561 true scaffold_1: 19123040-19135600 Capsella rubella
Carub.0001s4368 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 19123040-19133039 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361991 5261 Brassicaceae View MSA
123828918 5264 Brassicales-Malvales View MSA
124342668 5266 SBM View MSA
124242192 5268 Malvidae View MSA
124061086 5270 Rosid View MSA
123739430 5271 Pentapetalae View MSA
122786785 5272 Eudicot View MSA
122045742 5273 Angiosperm View MSA
121310493 5274 Embryophyte View MSA
123347963 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain