Gene : Carub.0001s3800 C. rubella v1.1
Defline:  (1 of 1) 4.2.3.5 - Chorismate synthase / 5-enolpyruvylshikimate-3-phosphate phospholyase Genomic Order:  3800
Name:  ? Carub.0001s3800 Secondary Identifier:  ? PAC:39228635
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella ARO-PWY Capsella rubella pathologic  
Crubella PWY-6163 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s3800 0.5kb upstream 0.5kb upstream 3620 true scaffold_1: 16750028-16753647 Capsella rubella
Carub.0001s3800 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 16753148-16753647 Capsella rubella
Carub.0001s3800 0.5kb downstream 0.5kb downstream 3620 true scaffold_1: 16749528-16753147 Capsella rubella
Carub.0001s3800 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 16749528-16750027 Capsella rubella
Carub.0001s3800 1.0kb upstream 1.0kb upstream 4120 true scaffold_1: 16750028-16754147 Capsella rubella
Carub.0001s3800 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 16753148-16754147 Capsella rubella
Carub.0001s3800 1.0kb downstream 1.0kb downstream 4120 true scaffold_1: 16749028-16753147 Capsella rubella
Carub.0001s3800 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 16749028-16750027 Capsella rubella
Carub.0001s3800 2.0kb upstream 2.0kb upstream 5120 true scaffold_1: 16750028-16755147 Capsella rubella
Carub.0001s3800 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 16753148-16755147 Capsella rubella
Carub.0001s3800 2.0kb downstream 2.0kb downstream 5120 true scaffold_1: 16748028-16753147 Capsella rubella
Carub.0001s3800 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 16748028-16750027 Capsella rubella
Carub.0001s3800 5.0kb upstream 5.0kb upstream 8120 true scaffold_1: 16750028-16758147 Capsella rubella
Carub.0001s3800 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 16753148-16758147 Capsella rubella
Carub.0001s3800 5.0kb downstream 5.0kb downstream 8120 true scaffold_1: 16745028-16753147 Capsella rubella
Carub.0001s3800 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 16745028-16750027 Capsella rubella
Carub.0001s3800 10.0kb upstream 10.0kb upstream 13120 true scaffold_1: 16750028-16763147 Capsella rubella
Carub.0001s3800 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 16753148-16763147 Capsella rubella
Carub.0001s3800 10.0kb downstream 10.0kb downstream 13120 true scaffold_1: 16740028-16753147 Capsella rubella
Carub.0001s3800 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 16740028-16750027 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041230 5273 Angiosperm View MSA
122374629 5261 Brassicaceae View MSA
123827910 5264 Brassicales-Malvales View MSA
124346296 5266 SBM View MSA
124238630 5268 Malvidae View MSA
124061876 5270 Rosid View MSA
123747909 5271 Pentapetalae View MSA
122787011 5272 Eudicot View MSA
121346403 5274 Embryophyte View MSA
123428194 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain