Gene : Carub.0001s3720 C. rubella v1.1
Defline:  (1 of 52) 3.2.1.15 - Polygalacturonase / Pectinase Genomic Order:  3720
Name:  ? Carub.0001s3720 Secondary Identifier:  ? PAC:39230300
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-1081 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s3720 0.5kb upstream 0.5kb upstream 3613 true scaffold_1: 16413166-16416778 Capsella rubella
Carub.0001s3720 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 16413166-16413665 Capsella rubella
Carub.0001s3720 0.5kb downstream 0.5kb downstream 3613 true scaffold_1: 16413666-16417278 Capsella rubella
Carub.0001s3720 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 16416779-16417278 Capsella rubella
Carub.0001s3720 1.0kb upstream 1.0kb upstream 4113 true scaffold_1: 16412666-16416778 Capsella rubella
Carub.0001s3720 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 16412666-16413665 Capsella rubella
Carub.0001s3720 1.0kb downstream 1.0kb downstream 4113 true scaffold_1: 16413666-16417778 Capsella rubella
Carub.0001s3720 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 16416779-16417778 Capsella rubella
Carub.0001s3720 2.0kb upstream 2.0kb upstream 5113 true scaffold_1: 16411666-16416778 Capsella rubella
Carub.0001s3720 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 16411666-16413665 Capsella rubella
Carub.0001s3720 2.0kb downstream 2.0kb downstream 5113 true scaffold_1: 16413666-16418778 Capsella rubella
Carub.0001s3720 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 16416779-16418778 Capsella rubella
Carub.0001s3720 5.0kb upstream 5.0kb upstream 8113 true scaffold_1: 16408666-16416778 Capsella rubella
Carub.0001s3720 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 16408666-16413665 Capsella rubella
Carub.0001s3720 5.0kb downstream 5.0kb downstream 8113 true scaffold_1: 16413666-16421778 Capsella rubella
Carub.0001s3720 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 16416779-16421778 Capsella rubella
Carub.0001s3720 10.0kb upstream 10.0kb upstream 13113 true scaffold_1: 16403666-16416778 Capsella rubella
Carub.0001s3720 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 16403666-16413665 Capsella rubella
Carub.0001s3720 10.0kb downstream 10.0kb downstream 13113 true scaffold_1: 16413666-16426778 Capsella rubella
Carub.0001s3720 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 16416779-16426778 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372611 5261 Brassicaceae View MSA
123835792 5264 Brassicales-Malvales View MSA
124337988 5266 SBM View MSA
124242051 5268 Malvidae View MSA
124065487 5270 Rosid View MSA
123736627 5271 Pentapetalae View MSA
122795582 5272 Eudicot View MSA
122048646 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain