Gene : Carub.0005s2524 C. rubella v1.1
Defline:  (1 of 1) PTHR14969:SF3 - DIHYDROSPHINGOSINE 1-PHOSPHATE PHOSPHATASE LCB3-RELATED Genomic Order:  2524
Name:  ? Carub.0005s2524 Secondary Identifier:  ? PAC:39224753
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella TRIGLSYN-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0005s2524 0.5kb upstream 0.5kb upstream 2831 true scaffold_5: 11907181-11910011 Capsella rubella
Carub.0005s2524 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 11907181-11907680 Capsella rubella
Carub.0005s2524 0.5kb downstream 0.5kb downstream 2831 true scaffold_5: 11907681-11910511 Capsella rubella
Carub.0005s2524 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 11910012-11910511 Capsella rubella
Carub.0005s2524 1.0kb upstream 1.0kb upstream 3331 true scaffold_5: 11906681-11910011 Capsella rubella
Carub.0005s2524 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 11906681-11907680 Capsella rubella
Carub.0005s2524 1.0kb downstream 1.0kb downstream 3331 true scaffold_5: 11907681-11911011 Capsella rubella
Carub.0005s2524 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 11910012-11911011 Capsella rubella
Carub.0005s2524 2.0kb upstream 2.0kb upstream 4331 true scaffold_5: 11905681-11910011 Capsella rubella
Carub.0005s2524 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 11905681-11907680 Capsella rubella
Carub.0005s2524 2.0kb downstream 2.0kb downstream 4331 true scaffold_5: 11907681-11912011 Capsella rubella
Carub.0005s2524 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 11910012-11912011 Capsella rubella
Carub.0005s2524 5.0kb upstream 5.0kb upstream 7331 true scaffold_5: 11902681-11910011 Capsella rubella
Carub.0005s2524 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 11902681-11907680 Capsella rubella
Carub.0005s2524 5.0kb downstream 5.0kb downstream 7331 true scaffold_5: 11907681-11915011 Capsella rubella
Carub.0005s2524 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 11910012-11915011 Capsella rubella
Carub.0005s2524 10.0kb upstream 10.0kb upstream 12331 true scaffold_5: 11897681-11910011 Capsella rubella
Carub.0005s2524 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 11897681-11907680 Capsella rubella
Carub.0005s2524 10.0kb downstream 10.0kb downstream 12331 true scaffold_5: 11907681-11920011 Capsella rubella
Carub.0005s2524 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 11910012-11920011 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367975 5261 Brassicaceae View MSA
123832821 5264 Brassicales-Malvales View MSA
124342995 5266 SBM View MSA
124241602 5268 Malvidae View MSA
124061101 5270 Rosid View MSA
123739708 5271 Pentapetalae View MSA
122787223 5272 Eudicot View MSA
122041787 5273 Angiosperm View MSA
121351488 5274 Embryophyte View MSA
123382186 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain