Gene : Carub.0005s2561 C. rubella v1.1
Defline:  (1 of 1) K01094 - phosphatidylglycerophosphatase GEP4 (GEP4) Genomic Order:  2561
Name:  ? Carub.0005s2561 Secondary Identifier:  ? PAC:39226176
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY4FS-7 Capsella rubella pathologic  
Crubella PWY-5269 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0005s2561 0.5kb upstream 0.5kb upstream 2063 true scaffold_5: 12053472-12055534 Capsella rubella
Carub.0005s2561 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 12055035-12055534 Capsella rubella
Carub.0005s2561 0.5kb downstream 0.5kb downstream 2063 true scaffold_5: 12052972-12055034 Capsella rubella
Carub.0005s2561 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 12052972-12053471 Capsella rubella
Carub.0005s2561 1.0kb upstream 1.0kb upstream 2563 true scaffold_5: 12053472-12056034 Capsella rubella
Carub.0005s2561 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 12055035-12056034 Capsella rubella
Carub.0005s2561 1.0kb downstream 1.0kb downstream 2563 true scaffold_5: 12052472-12055034 Capsella rubella
Carub.0005s2561 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 12052472-12053471 Capsella rubella
Carub.0005s2561 2.0kb upstream 2.0kb upstream 3563 true scaffold_5: 12053472-12057034 Capsella rubella
Carub.0005s2561 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 12055035-12057034 Capsella rubella
Carub.0005s2561 2.0kb downstream 2.0kb downstream 3563 true scaffold_5: 12051472-12055034 Capsella rubella
Carub.0005s2561 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 12051472-12053471 Capsella rubella
Carub.0005s2561 5.0kb upstream 5.0kb upstream 6563 true scaffold_5: 12053472-12060034 Capsella rubella
Carub.0005s2561 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 12055035-12060034 Capsella rubella
Carub.0005s2561 5.0kb downstream 5.0kb downstream 6563 true scaffold_5: 12048472-12055034 Capsella rubella
Carub.0005s2561 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 12048472-12053471 Capsella rubella
Carub.0005s2561 10.0kb upstream 10.0kb upstream 11563 true scaffold_5: 12053472-12065034 Capsella rubella
Carub.0005s2561 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 12055035-12065034 Capsella rubella
Carub.0005s2561 10.0kb downstream 10.0kb downstream 11563 true scaffold_5: 12043472-12055034 Capsella rubella
Carub.0005s2561 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 12043472-12053471 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373083 5261 Brassicaceae View MSA
123834432 5264 Brassicales-Malvales View MSA
124340921 5266 SBM View MSA
124244311 5268 Malvidae View MSA
124061153 5270 Rosid View MSA
123744955 5271 Pentapetalae View MSA
122787883 5272 Eudicot View MSA
122047314 5273 Angiosperm View MSA
121345007 5274 Embryophyte View MSA
123425553 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain