Gene : Carub.0001s2509 C. rubella v1.1
Defline:  (1 of 6) 2.5.1.27 - Adenylate dimethylallyltransferase (AMP-dependent) / Isopentenyltransferase Genomic Order:  2509
Name:  ? Carub.0001s2509 Secondary Identifier:  ? PAC:39229422
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-2681 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s2509 0.5kb upstream 0.5kb upstream 5902 true scaffold_1: 9049062-9054963 Capsella rubella
Carub.0001s2509 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 9049062-9049561 Capsella rubella
Carub.0001s2509 0.5kb downstream 0.5kb downstream 5902 true scaffold_1: 9049562-9055463 Capsella rubella
Carub.0001s2509 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 9054964-9055463 Capsella rubella
Carub.0001s2509 1.0kb upstream 1.0kb upstream 6402 true scaffold_1: 9048562-9054963 Capsella rubella
Carub.0001s2509 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 9048562-9049561 Capsella rubella
Carub.0001s2509 1.0kb downstream 1.0kb downstream 6402 true scaffold_1: 9049562-9055963 Capsella rubella
Carub.0001s2509 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 9054964-9055963 Capsella rubella
Carub.0001s2509 2.0kb upstream 2.0kb upstream 7402 true scaffold_1: 9047562-9054963 Capsella rubella
Carub.0001s2509 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 9047562-9049561 Capsella rubella
Carub.0001s2509 2.0kb downstream 2.0kb downstream 7402 true scaffold_1: 9049562-9056963 Capsella rubella
Carub.0001s2509 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 9054964-9056963 Capsella rubella
Carub.0001s2509 5.0kb upstream 5.0kb upstream 10402 true scaffold_1: 9044562-9054963 Capsella rubella
Carub.0001s2509 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 9044562-9049561 Capsella rubella
Carub.0001s2509 5.0kb downstream 5.0kb downstream 10402 true scaffold_1: 9049562-9059963 Capsella rubella
Carub.0001s2509 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 9054964-9059963 Capsella rubella
Carub.0001s2509 10.0kb upstream 10.0kb upstream 15402 true scaffold_1: 9039562-9054963 Capsella rubella
Carub.0001s2509 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 9039562-9049561 Capsella rubella
Carub.0001s2509 10.0kb downstream 10.0kb downstream 15402 true scaffold_1: 9049562-9064963 Capsella rubella
Carub.0001s2509 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 9054964-9064963 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379425 5261 Brassicaceae View MSA
123837698 5264 Brassicales-Malvales View MSA
124349222 5266 SBM View MSA
124250835 5268 Malvidae View MSA
124061925 5270 Rosid View MSA
123742682 5271 Pentapetalae View MSA
122792550 5272 Eudicot View MSA
122046326 5273 Angiosperm View MSA
121310589 5274 Embryophyte View MSA
123428607 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain