Gene : Carub.0001s2047 C. rubella v1.1
Defline:  (1 of 1) PTHR13871//PTHR13871:SF43 - THIOREDOXIN // CYSTEINE/HISTIDINE-RICH C1 DOMAIN FAMILY PROTEIN Genomic Order:  2047
Name:  ? Carub.0001s2047 Secondary Identifier:  ? PAC:39228525
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-7039 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s2047 0.5kb upstream 0.5kb upstream 2085 true scaffold_1: 7336481-7338565 Capsella rubella
Carub.0001s2047 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 7338066-7338565 Capsella rubella
Carub.0001s2047 0.5kb downstream 0.5kb downstream 2085 true scaffold_1: 7335981-7338065 Capsella rubella
Carub.0001s2047 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 7335981-7336480 Capsella rubella
Carub.0001s2047 1.0kb upstream 1.0kb upstream 2585 true scaffold_1: 7336481-7339065 Capsella rubella
Carub.0001s2047 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 7338066-7339065 Capsella rubella
Carub.0001s2047 1.0kb downstream 1.0kb downstream 2585 true scaffold_1: 7335481-7338065 Capsella rubella
Carub.0001s2047 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 7335481-7336480 Capsella rubella
Carub.0001s2047 2.0kb upstream 2.0kb upstream 3585 true scaffold_1: 7336481-7340065 Capsella rubella
Carub.0001s2047 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 7338066-7340065 Capsella rubella
Carub.0001s2047 2.0kb downstream 2.0kb downstream 3585 true scaffold_1: 7334481-7338065 Capsella rubella
Carub.0001s2047 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 7334481-7336480 Capsella rubella
Carub.0001s2047 5.0kb upstream 5.0kb upstream 6585 true scaffold_1: 7336481-7343065 Capsella rubella
Carub.0001s2047 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 7338066-7343065 Capsella rubella
Carub.0001s2047 5.0kb downstream 5.0kb downstream 6585 true scaffold_1: 7331481-7338065 Capsella rubella
Carub.0001s2047 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 7331481-7336480 Capsella rubella
Carub.0001s2047 10.0kb upstream 10.0kb upstream 11585 true scaffold_1: 7336481-7348065 Capsella rubella
Carub.0001s2047 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 7338066-7348065 Capsella rubella
Carub.0001s2047 10.0kb downstream 10.0kb downstream 11585 true scaffold_1: 7326481-7338065 Capsella rubella
Carub.0001s2047 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 7326481-7336480 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368030 5261 Brassicaceae View MSA
123840186 5264 Brassicales-Malvales View MSA
124340169 5266 SBM View MSA
124239800 5268 Malvidae View MSA
124061388 5270 Rosid View MSA
123737887 5271 Pentapetalae View MSA
122796546 5272 Eudicot View MSA
122051127 5273 Angiosperm View MSA
121351229 5274 Embryophyte View MSA
123382066 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain