Gene : Carub.0001s2139 C. rubella v1.1
Defline:  (1 of 1) PTHR23084//PTHR23084:SF136 - PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE RELATED // SUBFAMILY NOT NAMED Genomic Order:  2139
Name:  ? Carub.0001s2139 Secondary Identifier:  ? PAC:39230371
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-6351 Capsella rubella pathologic  
Crubella PWY-6352 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s2139 0.5kb upstream 0.5kb upstream 2513 true scaffold_1: 7699971-7702483 Capsella rubella
Carub.0001s2139 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 7701984-7702483 Capsella rubella
Carub.0001s2139 0.5kb downstream 0.5kb downstream 2513 true scaffold_1: 7699471-7701983 Capsella rubella
Carub.0001s2139 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 7699471-7699970 Capsella rubella
Carub.0001s2139 1.0kb upstream 1.0kb upstream 3013 true scaffold_1: 7699971-7702983 Capsella rubella
Carub.0001s2139 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 7701984-7702983 Capsella rubella
Carub.0001s2139 1.0kb downstream 1.0kb downstream 3013 true scaffold_1: 7698971-7701983 Capsella rubella
Carub.0001s2139 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 7698971-7699970 Capsella rubella
Carub.0001s2139 2.0kb upstream 2.0kb upstream 4013 true scaffold_1: 7699971-7703983 Capsella rubella
Carub.0001s2139 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 7701984-7703983 Capsella rubella
Carub.0001s2139 2.0kb downstream 2.0kb downstream 4013 true scaffold_1: 7697971-7701983 Capsella rubella
Carub.0001s2139 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 7697971-7699970 Capsella rubella
Carub.0001s2139 5.0kb upstream 5.0kb upstream 7013 true scaffold_1: 7699971-7706983 Capsella rubella
Carub.0001s2139 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 7701984-7706983 Capsella rubella
Carub.0001s2139 5.0kb downstream 5.0kb downstream 7013 true scaffold_1: 7694971-7701983 Capsella rubella
Carub.0001s2139 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 7694971-7699970 Capsella rubella
Carub.0001s2139 10.0kb upstream 10.0kb upstream 12013 true scaffold_1: 7699971-7711983 Capsella rubella
Carub.0001s2139 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 7701984-7711983 Capsella rubella
Carub.0001s2139 10.0kb downstream 10.0kb downstream 12013 true scaffold_1: 7689971-7701983 Capsella rubella
Carub.0001s2139 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 7689971-7699970 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360269 5261 Brassicaceae View MSA
123839023 5264 Brassicales-Malvales View MSA
124337793 5266 SBM View MSA
124241055 5268 Malvidae View MSA
124062192 5270 Rosid View MSA
123740472 5271 Pentapetalae View MSA
122790939 5272 Eudicot View MSA
122046556 5273 Angiosperm View MSA
121350119 5274 Embryophyte View MSA
123428791 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain