Gene : Carub.0001s2156 C. rubella v1.1
Defline:  (1 of 2) PTHR11680:SF7 - SERINE HYDROXYMETHYLTRANSFERASE 6-RELATED Genomic Order:  2156
Name:  ? Carub.0001s2156 Secondary Identifier:  ? PAC:39227356
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella GLYSYN-PWY Capsella rubella pathologic  
Crubella PWY-2161 Capsella rubella pathologic  
Crubella PWY-3841 Capsella rubella pathologic  
Crubella SER-GLYSYN-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s2156 0.5kb upstream 0.5kb upstream 3441 true scaffold_1: 7745539-7748979 Capsella rubella
Carub.0001s2156 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 7745539-7746038 Capsella rubella
Carub.0001s2156 0.5kb downstream 0.5kb downstream 3441 true scaffold_1: 7746039-7749479 Capsella rubella
Carub.0001s2156 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 7748980-7749479 Capsella rubella
Carub.0001s2156 1.0kb upstream 1.0kb upstream 3941 true scaffold_1: 7745039-7748979 Capsella rubella
Carub.0001s2156 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 7745039-7746038 Capsella rubella
Carub.0001s2156 1.0kb downstream 1.0kb downstream 3941 true scaffold_1: 7746039-7749979 Capsella rubella
Carub.0001s2156 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 7748980-7749979 Capsella rubella
Carub.0001s2156 2.0kb upstream 2.0kb upstream 4941 true scaffold_1: 7744039-7748979 Capsella rubella
Carub.0001s2156 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 7744039-7746038 Capsella rubella
Carub.0001s2156 2.0kb downstream 2.0kb downstream 4941 true scaffold_1: 7746039-7750979 Capsella rubella
Carub.0001s2156 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 7748980-7750979 Capsella rubella
Carub.0001s2156 5.0kb upstream 5.0kb upstream 7941 true scaffold_1: 7741039-7748979 Capsella rubella
Carub.0001s2156 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 7741039-7746038 Capsella rubella
Carub.0001s2156 5.0kb downstream 5.0kb downstream 7941 true scaffold_1: 7746039-7753979 Capsella rubella
Carub.0001s2156 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 7748980-7753979 Capsella rubella
Carub.0001s2156 10.0kb upstream 10.0kb upstream 12941 true scaffold_1: 7736039-7748979 Capsella rubella
Carub.0001s2156 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 7736039-7746038 Capsella rubella
Carub.0001s2156 10.0kb downstream 10.0kb downstream 12941 true scaffold_1: 7746039-7758979 Capsella rubella
Carub.0001s2156 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 7748980-7758979 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371827 5261 Brassicaceae View MSA
123838669 5264 Brassicales-Malvales View MSA
124343045 5266 SBM View MSA
124253011 5268 Malvidae View MSA
124069560 5270 Rosid View MSA
123741866 5271 Pentapetalae View MSA
122787051 5272 Eudicot View MSA
122046261 5273 Angiosperm View MSA
121345900 5274 Embryophyte View MSA
123426459 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain