Gene : Carub.0001s1980 C. rubella v1.1
Defline:  (1 of 7) PF13041//PF13812 - PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  1980
Name:  ? Carub.0001s1980 Secondary Identifier:  ? PAC:39227813
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s1980 0.5kb upstream 0.5kb upstream 2342 true scaffold_1: 7061997-7064338 Capsella rubella
Carub.0001s1980 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 7061997-7062496 Capsella rubella
Carub.0001s1980 0.5kb downstream 0.5kb downstream 2342 true scaffold_1: 7062497-7064838 Capsella rubella
Carub.0001s1980 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 7064339-7064838 Capsella rubella
Carub.0001s1980 1.0kb upstream 1.0kb upstream 2842 true scaffold_1: 7061497-7064338 Capsella rubella
Carub.0001s1980 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 7061497-7062496 Capsella rubella
Carub.0001s1980 1.0kb downstream 1.0kb downstream 2842 true scaffold_1: 7062497-7065338 Capsella rubella
Carub.0001s1980 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 7064339-7065338 Capsella rubella
Carub.0001s1980 2.0kb upstream 2.0kb upstream 3842 true scaffold_1: 7060497-7064338 Capsella rubella
Carub.0001s1980 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 7060497-7062496 Capsella rubella
Carub.0001s1980 2.0kb downstream 2.0kb downstream 3842 true scaffold_1: 7062497-7066338 Capsella rubella
Carub.0001s1980 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 7064339-7066338 Capsella rubella
Carub.0001s1980 5.0kb upstream 5.0kb upstream 6842 true scaffold_1: 7057497-7064338 Capsella rubella
Carub.0001s1980 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 7057497-7062496 Capsella rubella
Carub.0001s1980 5.0kb downstream 5.0kb downstream 6842 true scaffold_1: 7062497-7069338 Capsella rubella
Carub.0001s1980 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 7064339-7069338 Capsella rubella
Carub.0001s1980 10.0kb upstream 10.0kb upstream 11842 true scaffold_1: 7052497-7064338 Capsella rubella
Carub.0001s1980 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 7052497-7062496 Capsella rubella
Carub.0001s1980 10.0kb downstream 10.0kb downstream 11842 true scaffold_1: 7062497-7074338 Capsella rubella
Carub.0001s1980 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 7064339-7074338 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122335012 5261 Brassicaceae Singleton cluster - no MSA
123775805 5264 Brassicales-Malvales Singleton cluster - no MSA
124274204 5266 SBM Singleton cluster - no MSA
124252806 5268 Malvidae View MSA
124060677 5270 Rosid View MSA
123746655 5271 Pentapetalae View MSA
122793179 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain