Gene : Carub.0001s1747 C. rubella v1.1
Defline:  (1 of 5) K00058 - D-3-phosphoglycerate dehydrogenase (serA, PHGDH) Genomic Order:  1747
Name:  ? Carub.0001s1747 Secondary Identifier:  ? PAC:39229898
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella SER-GLYSYN-PWY Capsella rubella pathologic  
Crubella SERSYN-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s1747 0.5kb upstream 0.5kb upstream 4324 true scaffold_1: 6137547-6141870 Capsella rubella
Carub.0001s1747 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 6137547-6138046 Capsella rubella
Carub.0001s1747 0.5kb downstream 0.5kb downstream 4324 true scaffold_1: 6138047-6142370 Capsella rubella
Carub.0001s1747 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 6141871-6142370 Capsella rubella
Carub.0001s1747 1.0kb upstream 1.0kb upstream 4824 true scaffold_1: 6137047-6141870 Capsella rubella
Carub.0001s1747 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 6137047-6138046 Capsella rubella
Carub.0001s1747 1.0kb downstream 1.0kb downstream 4824 true scaffold_1: 6138047-6142870 Capsella rubella
Carub.0001s1747 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 6141871-6142870 Capsella rubella
Carub.0001s1747 2.0kb upstream 2.0kb upstream 5824 true scaffold_1: 6136047-6141870 Capsella rubella
Carub.0001s1747 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 6136047-6138046 Capsella rubella
Carub.0001s1747 2.0kb downstream 2.0kb downstream 5824 true scaffold_1: 6138047-6143870 Capsella rubella
Carub.0001s1747 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 6141871-6143870 Capsella rubella
Carub.0001s1747 5.0kb upstream 5.0kb upstream 8824 true scaffold_1: 6133047-6141870 Capsella rubella
Carub.0001s1747 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 6133047-6138046 Capsella rubella
Carub.0001s1747 5.0kb downstream 5.0kb downstream 8824 true scaffold_1: 6138047-6146870 Capsella rubella
Carub.0001s1747 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 6141871-6146870 Capsella rubella
Carub.0001s1747 10.0kb upstream 10.0kb upstream 13824 true scaffold_1: 6128047-6141870 Capsella rubella
Carub.0001s1747 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 6128047-6138046 Capsella rubella
Carub.0001s1747 10.0kb downstream 10.0kb downstream 13824 true scaffold_1: 6138047-6151870 Capsella rubella
Carub.0001s1747 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 6141871-6151870 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363628 5261 Brassicaceae View MSA
123837054 5264 Brassicales-Malvales View MSA
124346998 5266 SBM View MSA
124246038 5268 Malvidae View MSA
124069252 5270 Rosid View MSA
123744106 5271 Pentapetalae View MSA
122795023 5272 Eudicot View MSA
122044765 5273 Angiosperm View MSA
121347094 5274 Embryophyte View MSA
123427510 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain