Gene : Carub.0001s1706 C. rubella v1.1
Defline:  (1 of 2) K00814 - alanine transaminase (GPT, ALT) Genomic Order:  1706
Name:  ? Carub.0001s1706 Secondary Identifier:  ? PAC:39228831
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella ALANINE-DEG3-PWY Capsella rubella pathologic  
Crubella ALANINE-SYN2-PWY Capsella rubella pathologic  
Crubella PWY-7115 Capsella rubella pathologic  
Crubella PWY-7117 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s1706 0.5kb upstream 0.5kb upstream 4301 true scaffold_1: 5973538-5977838 Capsella rubella
Carub.0001s1706 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 5973538-5974037 Capsella rubella
Carub.0001s1706 0.5kb downstream 0.5kb downstream 4301 true scaffold_1: 5974038-5978338 Capsella rubella
Carub.0001s1706 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 5977839-5978338 Capsella rubella
Carub.0001s1706 1.0kb upstream 1.0kb upstream 4801 true scaffold_1: 5973038-5977838 Capsella rubella
Carub.0001s1706 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 5973038-5974037 Capsella rubella
Carub.0001s1706 1.0kb downstream 1.0kb downstream 4801 true scaffold_1: 5974038-5978838 Capsella rubella
Carub.0001s1706 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 5977839-5978838 Capsella rubella
Carub.0001s1706 2.0kb upstream 2.0kb upstream 5801 true scaffold_1: 5972038-5977838 Capsella rubella
Carub.0001s1706 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 5972038-5974037 Capsella rubella
Carub.0001s1706 2.0kb downstream 2.0kb downstream 5801 true scaffold_1: 5974038-5979838 Capsella rubella
Carub.0001s1706 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 5977839-5979838 Capsella rubella
Carub.0001s1706 5.0kb upstream 5.0kb upstream 8801 true scaffold_1: 5969038-5977838 Capsella rubella
Carub.0001s1706 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 5969038-5974037 Capsella rubella
Carub.0001s1706 5.0kb downstream 5.0kb downstream 8801 true scaffold_1: 5974038-5982838 Capsella rubella
Carub.0001s1706 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 5977839-5982838 Capsella rubella
Carub.0001s1706 10.0kb upstream 10.0kb upstream 13801 true scaffold_1: 5964038-5977838 Capsella rubella
Carub.0001s1706 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 5964038-5974037 Capsella rubella
Carub.0001s1706 10.0kb downstream 10.0kb downstream 13801 true scaffold_1: 5974038-5987838 Capsella rubella
Carub.0001s1706 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 5977839-5987838 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366358 5261 Brassicaceae View MSA
123836852 5264 Brassicales-Malvales View MSA
124344699 5266 SBM View MSA
124251764 5268 Malvidae View MSA
124064256 5270 Rosid View MSA
123749170 5271 Pentapetalae View MSA
122793882 5272 Eudicot View MSA
122043472 5273 Angiosperm View MSA
121347513 5274 Embryophyte View MSA
123427750 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain