Gene : Carub.0001s1827 C. rubella v1.1
Defline:  (1 of 2) K01079 - phosphoserine phosphatase (serB, PSPH) Genomic Order:  1827
Name:  ? Carub.0001s1827 Secondary Identifier:  ? PAC:39231005
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella SER-GLYSYN-PWY Capsella rubella pathologic  
Crubella SERSYN-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s1827 0.5kb upstream 0.5kb upstream 2545 true scaffold_1: 6442143-6444687 Capsella rubella
Carub.0001s1827 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 6444188-6444687 Capsella rubella
Carub.0001s1827 0.5kb downstream 0.5kb downstream 2545 true scaffold_1: 6441643-6444187 Capsella rubella
Carub.0001s1827 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 6441643-6442142 Capsella rubella
Carub.0001s1827 1.0kb upstream 1.0kb upstream 3045 true scaffold_1: 6442143-6445187 Capsella rubella
Carub.0001s1827 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 6444188-6445187 Capsella rubella
Carub.0001s1827 1.0kb downstream 1.0kb downstream 3045 true scaffold_1: 6441143-6444187 Capsella rubella
Carub.0001s1827 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 6441143-6442142 Capsella rubella
Carub.0001s1827 2.0kb upstream 2.0kb upstream 4045 true scaffold_1: 6442143-6446187 Capsella rubella
Carub.0001s1827 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 6444188-6446187 Capsella rubella
Carub.0001s1827 2.0kb downstream 2.0kb downstream 4045 true scaffold_1: 6440143-6444187 Capsella rubella
Carub.0001s1827 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 6440143-6442142 Capsella rubella
Carub.0001s1827 5.0kb upstream 5.0kb upstream 7045 true scaffold_1: 6442143-6449187 Capsella rubella
Carub.0001s1827 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 6444188-6449187 Capsella rubella
Carub.0001s1827 5.0kb downstream 5.0kb downstream 7045 true scaffold_1: 6437143-6444187 Capsella rubella
Carub.0001s1827 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 6437143-6442142 Capsella rubella
Carub.0001s1827 10.0kb upstream 10.0kb upstream 12045 true scaffold_1: 6442143-6454187 Capsella rubella
Carub.0001s1827 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 6444188-6454187 Capsella rubella
Carub.0001s1827 10.0kb downstream 10.0kb downstream 12045 true scaffold_1: 6432143-6444187 Capsella rubella
Carub.0001s1827 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 6432143-6442142 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360753 5261 Brassicaceae View MSA
123828386 5264 Brassicales-Malvales View MSA
124340863 5266 SBM View MSA
124243277 5268 Malvidae View MSA
124065988 5270 Rosid View MSA
123738315 5271 Pentapetalae View MSA
122789675 5272 Eudicot View MSA
122041828 5273 Angiosperm View MSA
121346713 5274 Embryophyte View MSA
123426809 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain