Gene : Carub.0005s2780 C. rubella v1.1
Defline:  (1 of 1) KOG0492 - Transcription factor MSH, contains HOX domain Genomic Order:  2780
Name:  ? Carub.0005s2780 Secondary Identifier:  ? PAC:39225407
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0005s2780 0.5kb upstream 0.5kb upstream 5324 true scaffold_5: 12843082-12848405 Capsella rubella
Carub.0005s2780 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 12843082-12843581 Capsella rubella
Carub.0005s2780 0.5kb downstream 0.5kb downstream 5324 true scaffold_5: 12843582-12848905 Capsella rubella
Carub.0005s2780 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 12848406-12848905 Capsella rubella
Carub.0005s2780 1.0kb upstream 1.0kb upstream 5824 true scaffold_5: 12842582-12848405 Capsella rubella
Carub.0005s2780 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 12842582-12843581 Capsella rubella
Carub.0005s2780 1.0kb downstream 1.0kb downstream 5824 true scaffold_5: 12843582-12849405 Capsella rubella
Carub.0005s2780 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 12848406-12849405 Capsella rubella
Carub.0005s2780 2.0kb upstream 2.0kb upstream 6824 true scaffold_5: 12841582-12848405 Capsella rubella
Carub.0005s2780 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 12841582-12843581 Capsella rubella
Carub.0005s2780 2.0kb downstream 2.0kb downstream 6824 true scaffold_5: 12843582-12850405 Capsella rubella
Carub.0005s2780 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 12848406-12850405 Capsella rubella
Carub.0005s2780 5.0kb upstream 5.0kb upstream 9824 true scaffold_5: 12838582-12848405 Capsella rubella
Carub.0005s2780 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 12838582-12843581 Capsella rubella
Carub.0005s2780 5.0kb downstream 5.0kb downstream 9824 true scaffold_5: 12843582-12853405 Capsella rubella
Carub.0005s2780 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 12848406-12853405 Capsella rubella
Carub.0005s2780 10.0kb upstream 10.0kb upstream 14824 true scaffold_5: 12833582-12848405 Capsella rubella
Carub.0005s2780 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 12833582-12843581 Capsella rubella
Carub.0005s2780 10.0kb downstream 10.0kb downstream 14824 true scaffold_5: 12843582-12858405 Capsella rubella
Carub.0005s2780 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 12848406-12858405 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371211 5261 Brassicaceae View MSA
123800125 5264 Brassicales-Malvales View MSA
124297574 5266 SBM View MSA
124149426 5268 Malvidae View MSA
124063291 5270 Rosid View MSA
123740352 5271 Pentapetalae View MSA
122790073 5272 Eudicot View MSA
122048483 5273 Angiosperm View MSA
121350910 5274 Embryophyte View MSA
123381934 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain