Gene : Carub.0001s3933 C. rubella v1.1
Defline:  (1 of 1) PTHR11777//PTHR11777:SF18 - ALANYL-TRNA SYNTHETASE // ALANINE--TRNA LIGASE, CYTOPLASMIC Genomic Order:  3933
Name:  ? Carub.0001s3933 Secondary Identifier:  ? PAC:39229942
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella TRNA-CHARGING-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s3933 0.5kb upstream 0.5kb upstream 7645 true scaffold_1: 17328105-17335749 Capsella rubella
Carub.0001s3933 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 17335250-17335749 Capsella rubella
Carub.0001s3933 0.5kb downstream 0.5kb downstream 7645 true scaffold_1: 17327605-17335249 Capsella rubella
Carub.0001s3933 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 17327605-17328104 Capsella rubella
Carub.0001s3933 1.0kb upstream 1.0kb upstream 8145 true scaffold_1: 17328105-17336249 Capsella rubella
Carub.0001s3933 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 17335250-17336249 Capsella rubella
Carub.0001s3933 1.0kb downstream 1.0kb downstream 8145 true scaffold_1: 17327105-17335249 Capsella rubella
Carub.0001s3933 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 17327105-17328104 Capsella rubella
Carub.0001s3933 2.0kb upstream 2.0kb upstream 9145 true scaffold_1: 17328105-17337249 Capsella rubella
Carub.0001s3933 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 17335250-17337249 Capsella rubella
Carub.0001s3933 2.0kb downstream 2.0kb downstream 9145 true scaffold_1: 17326105-17335249 Capsella rubella
Carub.0001s3933 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 17326105-17328104 Capsella rubella
Carub.0001s3933 5.0kb upstream 5.0kb upstream 12145 true scaffold_1: 17328105-17340249 Capsella rubella
Carub.0001s3933 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 17335250-17340249 Capsella rubella
Carub.0001s3933 5.0kb downstream 5.0kb downstream 12145 true scaffold_1: 17323105-17335249 Capsella rubella
Carub.0001s3933 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 17323105-17328104 Capsella rubella
Carub.0001s3933 10.0kb upstream 10.0kb upstream 17145 true scaffold_1: 17328105-17345249 Capsella rubella
Carub.0001s3933 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 17335250-17345249 Capsella rubella
Carub.0001s3933 10.0kb downstream 10.0kb downstream 17145 true scaffold_1: 17318105-17335249 Capsella rubella
Carub.0001s3933 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 17318105-17328104 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364421 5261 Brassicaceae View MSA
123830021 5264 Brassicales-Malvales View MSA
124341952 5266 SBM View MSA
124240298 5268 Malvidae View MSA
124063784 5270 Rosid View MSA
123740226 5271 Pentapetalae View MSA
122791486 5272 Eudicot View MSA
122047019 5273 Angiosperm View MSA
121346985 5274 Embryophyte View MSA
123424131 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain