Gene : Carub.0001s3509 C. rubella v1.1
Defline:  (1 of 2) PTHR11699:SF171 - ALDEHYDE DEHYDROGENASE FAMILY 3 MEMBER I1, CHLOROPLASTIC Genomic Order:  3509
Name:  ? Carub.0001s3509 Secondary Identifier:  ? PAC:39231122
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-2724 Capsella rubella pathologic  
Crubella PWY-6054 Capsella rubella pathologic  
Crubella PWY66-21 Capsella rubella pathologic  
Crubella PWY66-389 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s3509 0.5kb upstream 0.5kb upstream 4339 true scaffold_1: 15211859-15216197 Capsella rubella
Carub.0001s3509 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 15215698-15216197 Capsella rubella
Carub.0001s3509 0.5kb downstream 0.5kb downstream 4339 true scaffold_1: 15211359-15215697 Capsella rubella
Carub.0001s3509 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 15211359-15211858 Capsella rubella
Carub.0001s3509 1.0kb upstream 1.0kb upstream 4839 true scaffold_1: 15211859-15216697 Capsella rubella
Carub.0001s3509 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 15215698-15216697 Capsella rubella
Carub.0001s3509 1.0kb downstream 1.0kb downstream 4839 true scaffold_1: 15210859-15215697 Capsella rubella
Carub.0001s3509 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 15210859-15211858 Capsella rubella
Carub.0001s3509 2.0kb upstream 2.0kb upstream 5839 true scaffold_1: 15211859-15217697 Capsella rubella
Carub.0001s3509 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 15215698-15217697 Capsella rubella
Carub.0001s3509 2.0kb downstream 2.0kb downstream 5839 true scaffold_1: 15209859-15215697 Capsella rubella
Carub.0001s3509 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 15209859-15211858 Capsella rubella
Carub.0001s3509 5.0kb upstream 5.0kb upstream 8839 true scaffold_1: 15211859-15220697 Capsella rubella
Carub.0001s3509 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 15215698-15220697 Capsella rubella
Carub.0001s3509 5.0kb downstream 5.0kb downstream 8839 true scaffold_1: 15206859-15215697 Capsella rubella
Carub.0001s3509 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 15206859-15211858 Capsella rubella
Carub.0001s3509 10.0kb upstream 10.0kb upstream 13839 true scaffold_1: 15211859-15225697 Capsella rubella
Carub.0001s3509 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 15215698-15225697 Capsella rubella
Carub.0001s3509 10.0kb downstream 10.0kb downstream 13839 true scaffold_1: 15201859-15215697 Capsella rubella
Carub.0001s3509 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 15201859-15211858 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363292 5261 Brassicaceae View MSA
123836527 5264 Brassicales-Malvales View MSA
124343189 5266 SBM View MSA
124240388 5268 Malvidae View MSA
124071959 5270 Rosid View MSA
123741483 5271 Pentapetalae View MSA
122790699 5272 Eudicot View MSA
122047593 5273 Angiosperm View MSA
121349887 5274 Embryophyte View MSA
123425420 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain