Gene : Carub.0001s3519 C. rubella v1.1
Defline:  (1 of 1) 1.14.13.122 - Chlorophyllide-a oxygenase / Cholorophyll-b synthase Genomic Order:  3519
Name:  ? Carub.0001s3519 Secondary Identifier:  ? PAC:39229385
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-5068 Capsella rubella pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s3519 0.5kb upstream 0.5kb upstream 3603 true scaffold_1: 15292427-15296029 Capsella rubella
Carub.0001s3519 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 15295530-15296029 Capsella rubella
Carub.0001s3519 0.5kb downstream 0.5kb downstream 3603 true scaffold_1: 15291927-15295529 Capsella rubella
Carub.0001s3519 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 15291927-15292426 Capsella rubella
Carub.0001s3519 1.0kb upstream 1.0kb upstream 4103 true scaffold_1: 15292427-15296529 Capsella rubella
Carub.0001s3519 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 15295530-15296529 Capsella rubella
Carub.0001s3519 1.0kb downstream 1.0kb downstream 4103 true scaffold_1: 15291427-15295529 Capsella rubella
Carub.0001s3519 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 15291427-15292426 Capsella rubella
Carub.0001s3519 2.0kb upstream 2.0kb upstream 5103 true scaffold_1: 15292427-15297529 Capsella rubella
Carub.0001s3519 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 15295530-15297529 Capsella rubella
Carub.0001s3519 2.0kb downstream 2.0kb downstream 5103 true scaffold_1: 15290427-15295529 Capsella rubella
Carub.0001s3519 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 15290427-15292426 Capsella rubella
Carub.0001s3519 5.0kb upstream 5.0kb upstream 8103 true scaffold_1: 15292427-15300529 Capsella rubella
Carub.0001s3519 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 15295530-15300529 Capsella rubella
Carub.0001s3519 5.0kb downstream 5.0kb downstream 8103 true scaffold_1: 15287427-15295529 Capsella rubella
Carub.0001s3519 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 15287427-15292426 Capsella rubella
Carub.0001s3519 10.0kb upstream 10.0kb upstream 13103 true scaffold_1: 15292427-15305529 Capsella rubella
Carub.0001s3519 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 15295530-15305529 Capsella rubella
Carub.0001s3519 10.0kb downstream 10.0kb downstream 13103 true scaffold_1: 15282427-15295529 Capsella rubella
Carub.0001s3519 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 15282427-15292426 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361363 5261 Brassicaceae View MSA
123838199 5264 Brassicales-Malvales View MSA
124342247 5266 SBM View MSA
124242720 5268 Malvidae View MSA
124067782 5270 Rosid View MSA
123744269 5271 Pentapetalae View MSA
122787506 5272 Eudicot View MSA
122048070 5273 Angiosperm View MSA
123429167 5275 Viridiplantae View MSA
121348979 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain