Gene : Carub.0001s3538 C. rubella v1.1
Defline:  (1 of 1) PTHR31423//PTHR31423:SF3 - FAMILY NOT NAMED // PROLYL-TRNA SYNTHETASE ASSOCIATED DOMAIN-CONTAINING PROTEIN 1-RELATED Genomic Order:  3538
Name:  ? Carub.0001s3538 Secondary Identifier:  ? PAC:39228597
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella TRNA-CHARGING-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s3538 0.5kb upstream 0.5kb upstream 2970 true scaffold_1: 15422350-15425319 Capsella rubella
Carub.0001s3538 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 15422350-15422849 Capsella rubella
Carub.0001s3538 0.5kb downstream 0.5kb downstream 2970 true scaffold_1: 15422850-15425819 Capsella rubella
Carub.0001s3538 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 15425320-15425819 Capsella rubella
Carub.0001s3538 1.0kb upstream 1.0kb upstream 3470 true scaffold_1: 15421850-15425319 Capsella rubella
Carub.0001s3538 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 15421850-15422849 Capsella rubella
Carub.0001s3538 1.0kb downstream 1.0kb downstream 3470 true scaffold_1: 15422850-15426319 Capsella rubella
Carub.0001s3538 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 15425320-15426319 Capsella rubella
Carub.0001s3538 2.0kb upstream 2.0kb upstream 4470 true scaffold_1: 15420850-15425319 Capsella rubella
Carub.0001s3538 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 15420850-15422849 Capsella rubella
Carub.0001s3538 2.0kb downstream 2.0kb downstream 4470 true scaffold_1: 15422850-15427319 Capsella rubella
Carub.0001s3538 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 15425320-15427319 Capsella rubella
Carub.0001s3538 5.0kb upstream 5.0kb upstream 7470 true scaffold_1: 15417850-15425319 Capsella rubella
Carub.0001s3538 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 15417850-15422849 Capsella rubella
Carub.0001s3538 5.0kb downstream 5.0kb downstream 7470 true scaffold_1: 15422850-15430319 Capsella rubella
Carub.0001s3538 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 15425320-15430319 Capsella rubella
Carub.0001s3538 10.0kb upstream 10.0kb upstream 12470 true scaffold_1: 15412850-15425319 Capsella rubella
Carub.0001s3538 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 15412850-15422849 Capsella rubella
Carub.0001s3538 10.0kb downstream 10.0kb downstream 12470 true scaffold_1: 15422850-15435319 Capsella rubella
Carub.0001s3538 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 15425320-15435319 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367335 5261 Brassicaceae View MSA
123836180 5264 Brassicales-Malvales View MSA
124337596 5266 SBM View MSA
124237844 5268 Malvidae View MSA
124062922 5270 Rosid View MSA
123736377 5271 Pentapetalae View MSA
122789736 5272 Eudicot View MSA
122045268 5273 Angiosperm View MSA
121348045 5274 Embryophyte View MSA
123425543 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain