Gene : Carub.0001s3306 C. rubella v1.1
Defline:  (1 of 5) PTHR16223:SF29 - TRANSCRIPTION FACTOR BHLH117-RELATED Genomic Order:  3306
Name:  ? Carub.0001s3306 Secondary Identifier:  ? PAC:39228537
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s3306 0.5kb upstream 0.5kb upstream 2358 true scaffold_1: 12477072-12479429 Capsella rubella
Carub.0001s3306 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 12477072-12477571 Capsella rubella
Carub.0001s3306 0.5kb downstream 0.5kb downstream 2358 true scaffold_1: 12477572-12479929 Capsella rubella
Carub.0001s3306 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 12479430-12479929 Capsella rubella
Carub.0001s3306 1.0kb upstream 1.0kb upstream 2858 true scaffold_1: 12476572-12479429 Capsella rubella
Carub.0001s3306 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 12476572-12477571 Capsella rubella
Carub.0001s3306 1.0kb downstream 1.0kb downstream 2858 true scaffold_1: 12477572-12480429 Capsella rubella
Carub.0001s3306 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 12479430-12480429 Capsella rubella
Carub.0001s3306 2.0kb upstream 2.0kb upstream 3858 true scaffold_1: 12475572-12479429 Capsella rubella
Carub.0001s3306 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 12475572-12477571 Capsella rubella
Carub.0001s3306 2.0kb downstream 2.0kb downstream 3858 true scaffold_1: 12477572-12481429 Capsella rubella
Carub.0001s3306 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 12479430-12481429 Capsella rubella
Carub.0001s3306 5.0kb upstream 5.0kb upstream 6858 true scaffold_1: 12472572-12479429 Capsella rubella
Carub.0001s3306 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 12472572-12477571 Capsella rubella
Carub.0001s3306 5.0kb downstream 5.0kb downstream 6858 true scaffold_1: 12477572-12484429 Capsella rubella
Carub.0001s3306 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 12479430-12484429 Capsella rubella
Carub.0001s3306 10.0kb upstream 10.0kb upstream 11858 true scaffold_1: 12467572-12479429 Capsella rubella
Carub.0001s3306 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 12467572-12477571 Capsella rubella
Carub.0001s3306 10.0kb downstream 10.0kb downstream 11858 true scaffold_1: 12477572-12489429 Capsella rubella
Carub.0001s3306 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 12479430-12489429 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377378 5261 Brassicaceae View MSA
123834418 5264 Brassicales-Malvales View MSA
124343262 5266 SBM View MSA
124238615 5268 Malvidae View MSA
124073706 5270 Rosid View MSA
123751595 5271 Pentapetalae View MSA
122793357 5272 Eudicot View MSA
122051356 5273 Angiosperm View MSA
121349754 5274 Embryophyte View MSA
123381429 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain