Gene : Carub.0001s3373 C. rubella v1.1
Defline:  (1 of 2) PTHR11680:SF7 - SERINE HYDROXYMETHYLTRANSFERASE 6-RELATED Genomic Order:  3373
Name:  ? Carub.0001s3373 Secondary Identifier:  ? PAC:39229503
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella GLYSYN-PWY Capsella rubella pathologic  
Crubella PWY-2161 Capsella rubella pathologic  
Crubella PWY-3841 Capsella rubella pathologic  
Crubella SER-GLYSYN-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s3373 0.5kb upstream 0.5kb upstream 2982 true scaffold_1: 13113876-13116857 Capsella rubella
Carub.0001s3373 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 13116358-13116857 Capsella rubella
Carub.0001s3373 0.5kb downstream 0.5kb downstream 2982 true scaffold_1: 13113376-13116357 Capsella rubella
Carub.0001s3373 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 13113376-13113875 Capsella rubella
Carub.0001s3373 1.0kb upstream 1.0kb upstream 3482 true scaffold_1: 13113876-13117357 Capsella rubella
Carub.0001s3373 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 13116358-13117357 Capsella rubella
Carub.0001s3373 1.0kb downstream 1.0kb downstream 3482 true scaffold_1: 13112876-13116357 Capsella rubella
Carub.0001s3373 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 13112876-13113875 Capsella rubella
Carub.0001s3373 2.0kb upstream 2.0kb upstream 4482 true scaffold_1: 13113876-13118357 Capsella rubella
Carub.0001s3373 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 13116358-13118357 Capsella rubella
Carub.0001s3373 2.0kb downstream 2.0kb downstream 4482 true scaffold_1: 13111876-13116357 Capsella rubella
Carub.0001s3373 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 13111876-13113875 Capsella rubella
Carub.0001s3373 5.0kb upstream 5.0kb upstream 7482 true scaffold_1: 13113876-13121357 Capsella rubella
Carub.0001s3373 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 13116358-13121357 Capsella rubella
Carub.0001s3373 5.0kb downstream 5.0kb downstream 7482 true scaffold_1: 13108876-13116357 Capsella rubella
Carub.0001s3373 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 13108876-13113875 Capsella rubella
Carub.0001s3373 10.0kb upstream 10.0kb upstream 12482 true scaffold_1: 13113876-13126357 Capsella rubella
Carub.0001s3373 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 13116358-13126357 Capsella rubella
Carub.0001s3373 10.0kb downstream 10.0kb downstream 12482 true scaffold_1: 13103876-13116357 Capsella rubella
Carub.0001s3373 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 13103876-13113875 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374952 5261 Brassicaceae View MSA
123838669 5264 Brassicales-Malvales View MSA
124343045 5266 SBM View MSA
124253011 5268 Malvidae View MSA
124069560 5270 Rosid View MSA
123741866 5271 Pentapetalae View MSA
122787051 5272 Eudicot View MSA
122046261 5273 Angiosperm View MSA
121345900 5274 Embryophyte View MSA
123426459 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain