Gene : Carub.0001s3957 C. rubella v1.1
Defline:  (1 of 1) PTHR12820 - VACUOLAR SORTING PROTEIN 53 Genomic Order:  3957
Name:  ? Carub.0001s3957 Secondary Identifier:  ? PAC:39229192
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s3957 0.5kb upstream 0.5kb upstream 8844 true scaffold_1: 17445998-17454841 Capsella rubella
Carub.0001s3957 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 17454342-17454841 Capsella rubella
Carub.0001s3957 0.5kb downstream 0.5kb downstream 8844 true scaffold_1: 17445498-17454341 Capsella rubella
Carub.0001s3957 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 17445498-17445997 Capsella rubella
Carub.0001s3957 1.0kb upstream 1.0kb upstream 9344 true scaffold_1: 17445998-17455341 Capsella rubella
Carub.0001s3957 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 17454342-17455341 Capsella rubella
Carub.0001s3957 1.0kb downstream 1.0kb downstream 9344 true scaffold_1: 17444998-17454341 Capsella rubella
Carub.0001s3957 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 17444998-17445997 Capsella rubella
Carub.0001s3957 2.0kb upstream 2.0kb upstream 10344 true scaffold_1: 17445998-17456341 Capsella rubella
Carub.0001s3957 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 17454342-17456341 Capsella rubella
Carub.0001s3957 2.0kb downstream 2.0kb downstream 10344 true scaffold_1: 17443998-17454341 Capsella rubella
Carub.0001s3957 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 17443998-17445997 Capsella rubella
Carub.0001s3957 5.0kb upstream 5.0kb upstream 13344 true scaffold_1: 17445998-17459341 Capsella rubella
Carub.0001s3957 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 17454342-17459341 Capsella rubella
Carub.0001s3957 5.0kb downstream 5.0kb downstream 13344 true scaffold_1: 17440998-17454341 Capsella rubella
Carub.0001s3957 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 17440998-17445997 Capsella rubella
Carub.0001s3957 10.0kb upstream 10.0kb upstream 18344 true scaffold_1: 17445998-17464341 Capsella rubella
Carub.0001s3957 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 17454342-17464341 Capsella rubella
Carub.0001s3957 10.0kb downstream 10.0kb downstream 18344 true scaffold_1: 17435998-17454341 Capsella rubella
Carub.0001s3957 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 17435998-17445997 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377207 5261 Brassicaceae View MSA
123830878 5264 Brassicales-Malvales View MSA
124349969 5266 SBM View MSA
124237123 5268 Malvidae View MSA
124060785 5270 Rosid View MSA
123745504 5271 Pentapetalae View MSA
122792209 5272 Eudicot View MSA
122042616 5273 Angiosperm View MSA
121345322 5274 Embryophyte View MSA
123426739 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain