Gene : Carub.0001s3159 C. rubella v1.1
Defline:  (1 of 1) PTHR12197:SF173 - CARBOXYLATE CLAMP-TETRATRICOPEPTIDE REPEAT PROTEIN Genomic Order:  3159
Name:  ? Carub.0001s3159 Secondary Identifier:  ? PAC:39227097
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s3159 0.5kb upstream 0.5kb upstream 5149 true scaffold_1: 11744575-11749723 Capsella rubella
Carub.0001s3159 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 11749224-11749723 Capsella rubella
Carub.0001s3159 0.5kb downstream 0.5kb downstream 5149 true scaffold_1: 11744075-11749223 Capsella rubella
Carub.0001s3159 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 11744075-11744574 Capsella rubella
Carub.0001s3159 1.0kb upstream 1.0kb upstream 5649 true scaffold_1: 11744575-11750223 Capsella rubella
Carub.0001s3159 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 11749224-11750223 Capsella rubella
Carub.0001s3159 1.0kb downstream 1.0kb downstream 5649 true scaffold_1: 11743575-11749223 Capsella rubella
Carub.0001s3159 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 11743575-11744574 Capsella rubella
Carub.0001s3159 2.0kb upstream 2.0kb upstream 6649 true scaffold_1: 11744575-11751223 Capsella rubella
Carub.0001s3159 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 11749224-11751223 Capsella rubella
Carub.0001s3159 2.0kb downstream 2.0kb downstream 6649 true scaffold_1: 11742575-11749223 Capsella rubella
Carub.0001s3159 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 11742575-11744574 Capsella rubella
Carub.0001s3159 5.0kb upstream 5.0kb upstream 9649 true scaffold_1: 11744575-11754223 Capsella rubella
Carub.0001s3159 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 11749224-11754223 Capsella rubella
Carub.0001s3159 5.0kb downstream 5.0kb downstream 9649 true scaffold_1: 11739575-11749223 Capsella rubella
Carub.0001s3159 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 11739575-11744574 Capsella rubella
Carub.0001s3159 10.0kb upstream 10.0kb upstream 14649 true scaffold_1: 11744575-11759223 Capsella rubella
Carub.0001s3159 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 11749224-11759223 Capsella rubella
Carub.0001s3159 10.0kb downstream 10.0kb downstream 14649 true scaffold_1: 11734575-11749223 Capsella rubella
Carub.0001s3159 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 11734575-11744574 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371990 5261 Brassicaceae View MSA
123832635 5264 Brassicales-Malvales View MSA
124343493 5266 SBM View MSA
124252050 5268 Malvidae View MSA
124072039 5270 Rosid View MSA
123748863 5271 Pentapetalae View MSA
122787018 5272 Eudicot View MSA
122047928 5273 Angiosperm View MSA
121346419 5274 Embryophyte View MSA
123428850 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain