Gene : Carub.0001s3453 C. rubella v1.1
Defline:  (1 of 2) PTHR12197:SF160 - PROTEIN SET DOMAIN GROUP 41 Genomic Order:  3453
Name:  ? Carub.0001s3453 Secondary Identifier:  ? PAC:39230338
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s3453 0.5kb upstream 0.5kb upstream 1884 true scaffold_1: 14772292-14774175 Capsella rubella
Carub.0001s3453 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 14773676-14774175 Capsella rubella
Carub.0001s3453 0.5kb downstream 0.5kb downstream 1884 true scaffold_1: 14771792-14773675 Capsella rubella
Carub.0001s3453 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 14771792-14772291 Capsella rubella
Carub.0001s3453 1.0kb upstream 1.0kb upstream 2384 true scaffold_1: 14772292-14774675 Capsella rubella
Carub.0001s3453 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 14773676-14774675 Capsella rubella
Carub.0001s3453 1.0kb downstream 1.0kb downstream 2384 true scaffold_1: 14771292-14773675 Capsella rubella
Carub.0001s3453 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 14771292-14772291 Capsella rubella
Carub.0001s3453 2.0kb upstream 2.0kb upstream 3384 true scaffold_1: 14772292-14775675 Capsella rubella
Carub.0001s3453 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 14773676-14775675 Capsella rubella
Carub.0001s3453 2.0kb downstream 2.0kb downstream 3384 true scaffold_1: 14770292-14773675 Capsella rubella
Carub.0001s3453 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 14770292-14772291 Capsella rubella
Carub.0001s3453 5.0kb upstream 5.0kb upstream 6384 true scaffold_1: 14772292-14778675 Capsella rubella
Carub.0001s3453 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 14773676-14778675 Capsella rubella
Carub.0001s3453 5.0kb downstream 5.0kb downstream 6384 true scaffold_1: 14767292-14773675 Capsella rubella
Carub.0001s3453 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 14767292-14772291 Capsella rubella
Carub.0001s3453 10.0kb upstream 10.0kb upstream 11384 true scaffold_1: 14772292-14783675 Capsella rubella
Carub.0001s3453 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 14773676-14783675 Capsella rubella
Carub.0001s3453 10.0kb downstream 10.0kb downstream 11384 true scaffold_1: 14762292-14773675 Capsella rubella
Carub.0001s3453 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 14762292-14772291 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122335211 5261 Brassicaceae Singleton cluster - no MSA
123775993 5264 Brassicales-Malvales Singleton cluster - no MSA
124274391 5266 SBM Singleton cluster - no MSA
124252797 5268 Malvidae View MSA
124072947 5270 Rosid View MSA
123748819 5271 Pentapetalae View MSA
122793120 5272 Eudicot View MSA
122044425 5273 Angiosperm View MSA
121310294 5274 Embryophyte View MSA
123428850 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain