Gene : Carub.0001s3199 C. rubella v1.1
Defline:  (1 of 1) PTHR22835//PTHR22835:SF207 - ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  3199
Name:  ? Carub.0001s3199 Secondary Identifier:  ? PAC:39229874
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella LIPAS-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s3199 0.5kb upstream 0.5kb upstream 2627 true scaffold_1: 11889159-11891785 Capsella rubella
Carub.0001s3199 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 11889159-11889658 Capsella rubella
Carub.0001s3199 0.5kb downstream 0.5kb downstream 2627 true scaffold_1: 11889659-11892285 Capsella rubella
Carub.0001s3199 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 11891786-11892285 Capsella rubella
Carub.0001s3199 1.0kb upstream 1.0kb upstream 3127 true scaffold_1: 11888659-11891785 Capsella rubella
Carub.0001s3199 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 11888659-11889658 Capsella rubella
Carub.0001s3199 1.0kb downstream 1.0kb downstream 3127 true scaffold_1: 11889659-11892785 Capsella rubella
Carub.0001s3199 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 11891786-11892785 Capsella rubella
Carub.0001s3199 2.0kb upstream 2.0kb upstream 4127 true scaffold_1: 11887659-11891785 Capsella rubella
Carub.0001s3199 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 11887659-11889658 Capsella rubella
Carub.0001s3199 2.0kb downstream 2.0kb downstream 4127 true scaffold_1: 11889659-11893785 Capsella rubella
Carub.0001s3199 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 11891786-11893785 Capsella rubella
Carub.0001s3199 5.0kb upstream 5.0kb upstream 7127 true scaffold_1: 11884659-11891785 Capsella rubella
Carub.0001s3199 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 11884659-11889658 Capsella rubella
Carub.0001s3199 5.0kb downstream 5.0kb downstream 7127 true scaffold_1: 11889659-11896785 Capsella rubella
Carub.0001s3199 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 11891786-11896785 Capsella rubella
Carub.0001s3199 10.0kb upstream 10.0kb upstream 12127 true scaffold_1: 11879659-11891785 Capsella rubella
Carub.0001s3199 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 11879659-11889658 Capsella rubella
Carub.0001s3199 10.0kb downstream 10.0kb downstream 12127 true scaffold_1: 11889659-11901785 Capsella rubella
Carub.0001s3199 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 11891786-11901785 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374702 5261 Brassicaceae View MSA
123830494 5264 Brassicales-Malvales View MSA
124342316 5266 SBM View MSA
124238632 5268 Malvidae View MSA
124067838 5270 Rosid View MSA
123737678 5271 Pentapetalae View MSA
122786109 5272 Eudicot View MSA
122042489 5273 Angiosperm View MSA
121351762 5274 Embryophyte View MSA
123428079 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain