Gene : Carub.0001s3285 C. rubella v1.1
Defline:  (1 of 5) PTHR10209:SF146 - 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED Genomic Order:  3285
Name:  ? Carub.0001s3285 Secondary Identifier:  ? PAC:39229992
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella ETHYL-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s3285 0.5kb upstream 0.5kb upstream 2883 true scaffold_1: 12331722-12334604 Capsella rubella
Carub.0001s3285 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 12331722-12332221 Capsella rubella
Carub.0001s3285 0.5kb downstream 0.5kb downstream 2883 true scaffold_1: 12332222-12335104 Capsella rubella
Carub.0001s3285 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 12334605-12335104 Capsella rubella
Carub.0001s3285 1.0kb upstream 1.0kb upstream 3383 true scaffold_1: 12331222-12334604 Capsella rubella
Carub.0001s3285 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 12331222-12332221 Capsella rubella
Carub.0001s3285 1.0kb downstream 1.0kb downstream 3383 true scaffold_1: 12332222-12335604 Capsella rubella
Carub.0001s3285 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 12334605-12335604 Capsella rubella
Carub.0001s3285 2.0kb upstream 2.0kb upstream 4383 true scaffold_1: 12330222-12334604 Capsella rubella
Carub.0001s3285 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 12330222-12332221 Capsella rubella
Carub.0001s3285 2.0kb downstream 2.0kb downstream 4383 true scaffold_1: 12332222-12336604 Capsella rubella
Carub.0001s3285 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 12334605-12336604 Capsella rubella
Carub.0001s3285 5.0kb upstream 5.0kb upstream 7383 true scaffold_1: 12327222-12334604 Capsella rubella
Carub.0001s3285 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 12327222-12332221 Capsella rubella
Carub.0001s3285 5.0kb downstream 5.0kb downstream 7383 true scaffold_1: 12332222-12339604 Capsella rubella
Carub.0001s3285 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 12334605-12339604 Capsella rubella
Carub.0001s3285 10.0kb upstream 10.0kb upstream 12383 true scaffold_1: 12322222-12334604 Capsella rubella
Carub.0001s3285 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 12322222-12332221 Capsella rubella
Carub.0001s3285 10.0kb downstream 10.0kb downstream 12383 true scaffold_1: 12332222-12344604 Capsella rubella
Carub.0001s3285 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 12334605-12344604 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360761 5261 Brassicaceae View MSA
123828557 5264 Brassicales-Malvales View MSA
124346706 5266 SBM View MSA
124244129 5268 Malvidae View MSA
124061088 5270 Rosid View MSA
123745959 5271 Pentapetalae View MSA
122787426 5272 Eudicot View MSA
122044176 5273 Angiosperm View MSA
123429101 5275 Viridiplantae View MSA
121345815 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain