Gene : Carub.0001s3240 C. rubella v1.1
Defline:  (1 of 1) PTHR11353//PTHR11353:SF107 - CHAPERONIN // 1-PHOSPHATIDYLINOSITOL-3-PHOSPHATE 5-KINASE FAB1D-RELATED Genomic Order:  3240
Name:  ? Carub.0001s3240 Secondary Identifier:  ? PAC:39230115
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-6352 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s3240 0.5kb upstream 0.5kb upstream 7105 true scaffold_1: 12065101-12072205 Capsella rubella
Carub.0001s3240 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 12065101-12065600 Capsella rubella
Carub.0001s3240 0.5kb downstream 0.5kb downstream 7105 true scaffold_1: 12065601-12072705 Capsella rubella
Carub.0001s3240 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 12072206-12072705 Capsella rubella
Carub.0001s3240 1.0kb upstream 1.0kb upstream 7605 true scaffold_1: 12064601-12072205 Capsella rubella
Carub.0001s3240 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 12064601-12065600 Capsella rubella
Carub.0001s3240 1.0kb downstream 1.0kb downstream 7605 true scaffold_1: 12065601-12073205 Capsella rubella
Carub.0001s3240 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 12072206-12073205 Capsella rubella
Carub.0001s3240 2.0kb upstream 2.0kb upstream 8605 true scaffold_1: 12063601-12072205 Capsella rubella
Carub.0001s3240 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 12063601-12065600 Capsella rubella
Carub.0001s3240 2.0kb downstream 2.0kb downstream 8605 true scaffold_1: 12065601-12074205 Capsella rubella
Carub.0001s3240 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 12072206-12074205 Capsella rubella
Carub.0001s3240 5.0kb upstream 5.0kb upstream 11605 true scaffold_1: 12060601-12072205 Capsella rubella
Carub.0001s3240 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 12060601-12065600 Capsella rubella
Carub.0001s3240 5.0kb downstream 5.0kb downstream 11605 true scaffold_1: 12065601-12077205 Capsella rubella
Carub.0001s3240 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 12072206-12077205 Capsella rubella
Carub.0001s3240 10.0kb upstream 10.0kb upstream 16605 true scaffold_1: 12055601-12072205 Capsella rubella
Carub.0001s3240 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 12055601-12065600 Capsella rubella
Carub.0001s3240 10.0kb downstream 10.0kb downstream 16605 true scaffold_1: 12065601-12082205 Capsella rubella
Carub.0001s3240 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 12072206-12082205 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364432 5261 Brassicaceae View MSA
123830954 5264 Brassicales-Malvales View MSA
124339290 5266 SBM View MSA
124242021 5268 Malvidae View MSA
124065286 5270 Rosid View MSA
123747253 5271 Pentapetalae View MSA
122794223 5272 Eudicot View MSA
122049046 5273 Angiosperm View MSA
121351376 5274 Embryophyte View MSA
123427544 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain