Gene : Carub.0001s3236 C. rubella v1.1
Defline:  (1 of 1) PTHR12161//PTHR12161:SF21 - UNCHARACTERIZED DUF292 // REGULATOR OF VPS4 ACTIVITY IN THE MVB PATHWAY PROTEIN Genomic Order:  3236
Name:  ? Carub.0001s3236 Secondary Identifier:  ? PAC:39231275
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s3236 0.5kb upstream 0.5kb upstream 4155 true scaffold_1: 12028959-12033113 Capsella rubella
Carub.0001s3236 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 12032614-12033113 Capsella rubella
Carub.0001s3236 0.5kb downstream 0.5kb downstream 4155 true scaffold_1: 12028459-12032613 Capsella rubella
Carub.0001s3236 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 12028459-12028958 Capsella rubella
Carub.0001s3236 1.0kb upstream 1.0kb upstream 4655 true scaffold_1: 12028959-12033613 Capsella rubella
Carub.0001s3236 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 12032614-12033613 Capsella rubella
Carub.0001s3236 1.0kb downstream 1.0kb downstream 4655 true scaffold_1: 12027959-12032613 Capsella rubella
Carub.0001s3236 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 12027959-12028958 Capsella rubella
Carub.0001s3236 2.0kb upstream 2.0kb upstream 5655 true scaffold_1: 12028959-12034613 Capsella rubella
Carub.0001s3236 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 12032614-12034613 Capsella rubella
Carub.0001s3236 2.0kb downstream 2.0kb downstream 5655 true scaffold_1: 12026959-12032613 Capsella rubella
Carub.0001s3236 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 12026959-12028958 Capsella rubella
Carub.0001s3236 5.0kb upstream 5.0kb upstream 8655 true scaffold_1: 12028959-12037613 Capsella rubella
Carub.0001s3236 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 12032614-12037613 Capsella rubella
Carub.0001s3236 5.0kb downstream 5.0kb downstream 8655 true scaffold_1: 12023959-12032613 Capsella rubella
Carub.0001s3236 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 12023959-12028958 Capsella rubella
Carub.0001s3236 10.0kb upstream 10.0kb upstream 13655 true scaffold_1: 12028959-12042613 Capsella rubella
Carub.0001s3236 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 12032614-12042613 Capsella rubella
Carub.0001s3236 10.0kb downstream 10.0kb downstream 13655 true scaffold_1: 12018959-12032613 Capsella rubella
Carub.0001s3236 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 12018959-12028958 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366056 5261 Brassicaceae View MSA
123840797 5264 Brassicales-Malvales View MSA
124337965 5266 SBM View MSA
124245103 5268 Malvidae View MSA
124068076 5270 Rosid View MSA
123736868 5271 Pentapetalae View MSA
122789571 5272 Eudicot View MSA
122045314 5273 Angiosperm View MSA
121350449 5274 Embryophyte View MSA
123424640 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain