Gene : Carub.0001s2962 C. rubella v1.1
Defline:  (1 of 1) 2.1.2.2 - Phosphoribosylglycinamide formyltransferase / Glycinamide ribonucleotide transformylase Genomic Order:  2962
Name:  ? Carub.0001s2962 Secondary Identifier:  ? PAC:39229404
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-6121 Capsella rubella pathologic  
Crubella PWY-6613 Capsella rubella pathologic  
Crubella PWY-841 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s2962 0.5kb upstream 0.5kb upstream 2047 true scaffold_1: 10900364-10902410 Capsella rubella
Carub.0001s2962 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 10900364-10900863 Capsella rubella
Carub.0001s2962 0.5kb downstream 0.5kb downstream 2047 true scaffold_1: 10900864-10902910 Capsella rubella
Carub.0001s2962 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 10902411-10902910 Capsella rubella
Carub.0001s2962 1.0kb upstream 1.0kb upstream 2547 true scaffold_1: 10899864-10902410 Capsella rubella
Carub.0001s2962 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 10899864-10900863 Capsella rubella
Carub.0001s2962 1.0kb downstream 1.0kb downstream 2547 true scaffold_1: 10900864-10903410 Capsella rubella
Carub.0001s2962 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 10902411-10903410 Capsella rubella
Carub.0001s2962 2.0kb upstream 2.0kb upstream 3547 true scaffold_1: 10898864-10902410 Capsella rubella
Carub.0001s2962 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 10898864-10900863 Capsella rubella
Carub.0001s2962 2.0kb downstream 2.0kb downstream 3547 true scaffold_1: 10900864-10904410 Capsella rubella
Carub.0001s2962 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 10902411-10904410 Capsella rubella
Carub.0001s2962 5.0kb upstream 5.0kb upstream 6547 true scaffold_1: 10895864-10902410 Capsella rubella
Carub.0001s2962 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 10895864-10900863 Capsella rubella
Carub.0001s2962 5.0kb downstream 5.0kb downstream 6547 true scaffold_1: 10900864-10907410 Capsella rubella
Carub.0001s2962 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 10902411-10907410 Capsella rubella
Carub.0001s2962 10.0kb upstream 10.0kb upstream 11547 true scaffold_1: 10890864-10902410 Capsella rubella
Carub.0001s2962 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 10890864-10900863 Capsella rubella
Carub.0001s2962 10.0kb downstream 10.0kb downstream 11547 true scaffold_1: 10900864-10912410 Capsella rubella
Carub.0001s2962 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 10902411-10912410 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370229 5261 Brassicaceae View MSA
123835311 5264 Brassicales-Malvales View MSA
124339680 5266 SBM View MSA
124244767 5268 Malvidae View MSA
124065104 5270 Rosid View MSA
123739815 5271 Pentapetalae View MSA
122788812 5272 Eudicot View MSA
122049914 5273 Angiosperm View MSA
121349551 5274 Embryophyte View MSA
123426469 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain