Gene : Carub.0001s3217 C. rubella v1.1
Defline:  (1 of 2) 2.7.1.32 - Choline kinase Genomic Order:  3217
Name:  ? Carub.0001s3217 Secondary Identifier:  ? PAC:39227454
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-3385 Capsella rubella pathologic  
Crubella PWY3O-450 Capsella rubella pathologic  
Crubella PWY4FS-6 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s3217 0.5kb upstream 0.5kb upstream 2219 true scaffold_1: 11962105-11964323 Capsella rubella
Carub.0001s3217 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 11962105-11962604 Capsella rubella
Carub.0001s3217 0.5kb downstream 0.5kb downstream 2219 true scaffold_1: 11962605-11964823 Capsella rubella
Carub.0001s3217 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 11964324-11964823 Capsella rubella
Carub.0001s3217 1.0kb upstream 1.0kb upstream 2719 true scaffold_1: 11961605-11964323 Capsella rubella
Carub.0001s3217 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 11961605-11962604 Capsella rubella
Carub.0001s3217 1.0kb downstream 1.0kb downstream 2719 true scaffold_1: 11962605-11965323 Capsella rubella
Carub.0001s3217 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 11964324-11965323 Capsella rubella
Carub.0001s3217 2.0kb upstream 2.0kb upstream 3719 true scaffold_1: 11960605-11964323 Capsella rubella
Carub.0001s3217 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 11960605-11962604 Capsella rubella
Carub.0001s3217 2.0kb downstream 2.0kb downstream 3719 true scaffold_1: 11962605-11966323 Capsella rubella
Carub.0001s3217 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 11964324-11966323 Capsella rubella
Carub.0001s3217 5.0kb upstream 5.0kb upstream 6719 true scaffold_1: 11957605-11964323 Capsella rubella
Carub.0001s3217 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 11957605-11962604 Capsella rubella
Carub.0001s3217 5.0kb downstream 5.0kb downstream 6719 true scaffold_1: 11962605-11969323 Capsella rubella
Carub.0001s3217 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 11964324-11969323 Capsella rubella
Carub.0001s3217 10.0kb upstream 10.0kb upstream 11719 true scaffold_1: 11952605-11964323 Capsella rubella
Carub.0001s3217 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 11952605-11962604 Capsella rubella
Carub.0001s3217 10.0kb downstream 10.0kb downstream 11719 true scaffold_1: 11962605-11974323 Capsella rubella
Carub.0001s3217 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 11964324-11974323 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372650 5261 Brassicaceae View MSA
123840519 5264 Brassicales-Malvales View MSA
124340711 5266 SBM View MSA
124247486 5268 Malvidae View MSA
124069180 5270 Rosid View MSA
123746925 5271 Pentapetalae View MSA
122797485 5272 Eudicot View MSA
122047896 5273 Angiosperm View MSA
121347088 5274 Embryophyte View MSA
123426626 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain