Gene : Carub.0001s2991 C. rubella v1.1
Defline:  (1 of 1) PTHR31642//PTHR31642:SF24 - FAMILY NOT NAMED // HXXXD-TYPE ACYL-TRANSFERASE-LIKE PROTEIN Genomic Order:  2991
Name:  ? Carub.0001s2991 Secondary Identifier:  ? PAC:39227268
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-4203 Capsella rubella pathologic  
Crubella PWY-5835 Capsella rubella pathologic  
Crubella PWY-6801 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s2991 0.5kb upstream 0.5kb upstream 1835 true scaffold_1: 11011370-11013204 Capsella rubella
Carub.0001s2991 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 11012705-11013204 Capsella rubella
Carub.0001s2991 0.5kb downstream 0.5kb downstream 1835 true scaffold_1: 11010870-11012704 Capsella rubella
Carub.0001s2991 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 11010870-11011369 Capsella rubella
Carub.0001s2991 1.0kb upstream 1.0kb upstream 2335 true scaffold_1: 11011370-11013704 Capsella rubella
Carub.0001s2991 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 11012705-11013704 Capsella rubella
Carub.0001s2991 1.0kb downstream 1.0kb downstream 2335 true scaffold_1: 11010370-11012704 Capsella rubella
Carub.0001s2991 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 11010370-11011369 Capsella rubella
Carub.0001s2991 2.0kb upstream 2.0kb upstream 3335 true scaffold_1: 11011370-11014704 Capsella rubella
Carub.0001s2991 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 11012705-11014704 Capsella rubella
Carub.0001s2991 2.0kb downstream 2.0kb downstream 3335 true scaffold_1: 11009370-11012704 Capsella rubella
Carub.0001s2991 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 11009370-11011369 Capsella rubella
Carub.0001s2991 5.0kb upstream 5.0kb upstream 6335 true scaffold_1: 11011370-11017704 Capsella rubella
Carub.0001s2991 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 11012705-11017704 Capsella rubella
Carub.0001s2991 5.0kb downstream 5.0kb downstream 6335 true scaffold_1: 11006370-11012704 Capsella rubella
Carub.0001s2991 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 11006370-11011369 Capsella rubella
Carub.0001s2991 10.0kb upstream 10.0kb upstream 11335 true scaffold_1: 11011370-11022704 Capsella rubella
Carub.0001s2991 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 11012705-11022704 Capsella rubella
Carub.0001s2991 10.0kb downstream 10.0kb downstream 11335 true scaffold_1: 11001370-11012704 Capsella rubella
Carub.0001s2991 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 11001370-11011369 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369633 5261 Brassicaceae View MSA
123829524 5264 Brassicales-Malvales View MSA
124342757 5266 SBM View MSA
124242615 5268 Malvidae View MSA
124061522 5270 Rosid View MSA
123756556 5271 Pentapetalae View MSA
122797720 5272 Eudicot View MSA
122051643 5273 Angiosperm View MSA
121350983 5274 Embryophyte View MSA
123428782 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain