Gene : Carub.0001s3001 C. rubella v1.1
Defline:  (1 of 2) PTHR10638//PTHR10638:SF36 - COPPER AMINE OXIDASE // AMINE OXIDASE-RELATED Genomic Order:  3001
Name:  ? Carub.0001s3001 Secondary Identifier:  ? PAC:39228669
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-5751 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s3001 0.5kb upstream 0.5kb upstream 4217 true scaffold_1: 11057100-11061316 Capsella rubella
Carub.0001s3001 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 11057100-11057599 Capsella rubella
Carub.0001s3001 0.5kb downstream 0.5kb downstream 4217 true scaffold_1: 11057600-11061816 Capsella rubella
Carub.0001s3001 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 11061317-11061816 Capsella rubella
Carub.0001s3001 1.0kb upstream 1.0kb upstream 4717 true scaffold_1: 11056600-11061316 Capsella rubella
Carub.0001s3001 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 11056600-11057599 Capsella rubella
Carub.0001s3001 1.0kb downstream 1.0kb downstream 4717 true scaffold_1: 11057600-11062316 Capsella rubella
Carub.0001s3001 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 11061317-11062316 Capsella rubella
Carub.0001s3001 2.0kb upstream 2.0kb upstream 5717 true scaffold_1: 11055600-11061316 Capsella rubella
Carub.0001s3001 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 11055600-11057599 Capsella rubella
Carub.0001s3001 2.0kb downstream 2.0kb downstream 5717 true scaffold_1: 11057600-11063316 Capsella rubella
Carub.0001s3001 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 11061317-11063316 Capsella rubella
Carub.0001s3001 5.0kb upstream 5.0kb upstream 8717 true scaffold_1: 11052600-11061316 Capsella rubella
Carub.0001s3001 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 11052600-11057599 Capsella rubella
Carub.0001s3001 5.0kb downstream 5.0kb downstream 8717 true scaffold_1: 11057600-11066316 Capsella rubella
Carub.0001s3001 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 11061317-11066316 Capsella rubella
Carub.0001s3001 10.0kb upstream 10.0kb upstream 13717 true scaffold_1: 11047600-11061316 Capsella rubella
Carub.0001s3001 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 11047600-11057599 Capsella rubella
Carub.0001s3001 10.0kb downstream 10.0kb downstream 13717 true scaffold_1: 11057600-11071316 Capsella rubella
Carub.0001s3001 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 11061317-11071316 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378849 5261 Brassicaceae View MSA
123837701 5264 Brassicales-Malvales View MSA
124346969 5266 SBM View MSA
124247192 5268 Malvidae View MSA
124072120 5270 Rosid View MSA
123747865 5271 Pentapetalae View MSA
122787372 5272 Eudicot View MSA
122049910 5273 Angiosperm View MSA
123428923 5275 Viridiplantae View MSA
121349913 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain