Gene : Carub.0001s2995 C. rubella v1.1
Defline:  (1 of 1) PTHR13069//PTHR13069:SF8 - UNCHARACTERIZED // 2-OXOGLUTARATE AND FE-DEPENDENT OXYGENASE FAMILY PROTEIN Genomic Order:  2995
Name:  ? Carub.0001s2995 Secondary Identifier:  ? PAC:39229353
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-6829 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s2995 0.5kb upstream 0.5kb upstream 2508 true scaffold_1: 11028111-11030618 Capsella rubella
Carub.0001s2995 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 11030119-11030618 Capsella rubella
Carub.0001s2995 0.5kb downstream 0.5kb downstream 2508 true scaffold_1: 11027611-11030118 Capsella rubella
Carub.0001s2995 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 11027611-11028110 Capsella rubella
Carub.0001s2995 1.0kb upstream 1.0kb upstream 3008 true scaffold_1: 11028111-11031118 Capsella rubella
Carub.0001s2995 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 11030119-11031118 Capsella rubella
Carub.0001s2995 1.0kb downstream 1.0kb downstream 3008 true scaffold_1: 11027111-11030118 Capsella rubella
Carub.0001s2995 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 11027111-11028110 Capsella rubella
Carub.0001s2995 2.0kb upstream 2.0kb upstream 4008 true scaffold_1: 11028111-11032118 Capsella rubella
Carub.0001s2995 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 11030119-11032118 Capsella rubella
Carub.0001s2995 2.0kb downstream 2.0kb downstream 4008 true scaffold_1: 11026111-11030118 Capsella rubella
Carub.0001s2995 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 11026111-11028110 Capsella rubella
Carub.0001s2995 5.0kb upstream 5.0kb upstream 7008 true scaffold_1: 11028111-11035118 Capsella rubella
Carub.0001s2995 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 11030119-11035118 Capsella rubella
Carub.0001s2995 5.0kb downstream 5.0kb downstream 7008 true scaffold_1: 11023111-11030118 Capsella rubella
Carub.0001s2995 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 11023111-11028110 Capsella rubella
Carub.0001s2995 10.0kb upstream 10.0kb upstream 12008 true scaffold_1: 11028111-11040118 Capsella rubella
Carub.0001s2995 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 11030119-11040118 Capsella rubella
Carub.0001s2995 10.0kb downstream 10.0kb downstream 12008 true scaffold_1: 11018111-11030118 Capsella rubella
Carub.0001s2995 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 11018111-11028110 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368205 5261 Brassicaceae View MSA
123836574 5264 Brassicales-Malvales View MSA
124322185 5266 SBM View MSA
124242136 5268 Malvidae View MSA
124068599 5270 Rosid View MSA
123740892 5271 Pentapetalae View MSA
122793671 5272 Eudicot View MSA
122046991 5273 Angiosperm View MSA
121347521 5274 Embryophyte View MSA
123425237 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain