Gene : Carub.0001s3053 C. rubella v1.1
Defline:  (1 of 1) K00630 - glycerol-3-phosphate O-acyltransferase (ATS1) Genomic Order:  3053
Name:  ? Carub.0001s3053 Secondary Identifier:  ? PAC:39228475
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY0-1319 Capsella rubella pathologic  
Crubella PWY4FS-7 Capsella rubella pathologic  
Crubella PWY-7411 Capsella rubella pathologic  
Crubella TRIGLSYN-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s3053 0.5kb upstream 0.5kb upstream 3814 true scaffold_1: 11289036-11292849 Capsella rubella
Carub.0001s3053 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 11292350-11292849 Capsella rubella
Carub.0001s3053 0.5kb downstream 0.5kb downstream 3814 true scaffold_1: 11288536-11292349 Capsella rubella
Carub.0001s3053 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 11288536-11289035 Capsella rubella
Carub.0001s3053 1.0kb upstream 1.0kb upstream 4314 true scaffold_1: 11289036-11293349 Capsella rubella
Carub.0001s3053 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 11292350-11293349 Capsella rubella
Carub.0001s3053 1.0kb downstream 1.0kb downstream 4314 true scaffold_1: 11288036-11292349 Capsella rubella
Carub.0001s3053 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 11288036-11289035 Capsella rubella
Carub.0001s3053 2.0kb upstream 2.0kb upstream 5314 true scaffold_1: 11289036-11294349 Capsella rubella
Carub.0001s3053 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 11292350-11294349 Capsella rubella
Carub.0001s3053 2.0kb downstream 2.0kb downstream 5314 true scaffold_1: 11287036-11292349 Capsella rubella
Carub.0001s3053 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 11287036-11289035 Capsella rubella
Carub.0001s3053 5.0kb upstream 5.0kb upstream 8314 true scaffold_1: 11289036-11297349 Capsella rubella
Carub.0001s3053 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 11292350-11297349 Capsella rubella
Carub.0001s3053 5.0kb downstream 5.0kb downstream 8314 true scaffold_1: 11284036-11292349 Capsella rubella
Carub.0001s3053 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 11284036-11289035 Capsella rubella
Carub.0001s3053 10.0kb upstream 10.0kb upstream 13314 true scaffold_1: 11289036-11302349 Capsella rubella
Carub.0001s3053 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 11292350-11302349 Capsella rubella
Carub.0001s3053 10.0kb downstream 10.0kb downstream 13314 true scaffold_1: 11279036-11292349 Capsella rubella
Carub.0001s3053 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 11279036-11289035 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360786 5261 Brassicaceae View MSA
123840834 5264 Brassicales-Malvales View MSA
124339399 5266 SBM View MSA
124237603 5268 Malvidae View MSA
124061873 5270 Rosid View MSA
123741043 5271 Pentapetalae View MSA
122789862 5272 Eudicot View MSA
122046647 5273 Angiosperm View MSA
121346869 5274 Embryophyte View MSA
123424445 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain