Gene : Carub.0001s0638 C. rubella v1.1
Defline:  (1 of 2) PTHR31165//PTHR31165:SF6 - FAMILY NOT NAMED // PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 Genomic Order:  638
Name:  ? Carub.0001s0638 Secondary Identifier:  ? PAC:39228851
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s0638 0.5kb upstream 0.5kb upstream 2047 true scaffold_1: 2237439-2239485 Capsella rubella
Carub.0001s0638 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 2238986-2239485 Capsella rubella
Carub.0001s0638 0.5kb downstream 0.5kb downstream 2047 true scaffold_1: 2236939-2238985 Capsella rubella
Carub.0001s0638 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 2236939-2237438 Capsella rubella
Carub.0001s0638 1.0kb upstream 1.0kb upstream 2547 true scaffold_1: 2237439-2239985 Capsella rubella
Carub.0001s0638 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 2238986-2239985 Capsella rubella
Carub.0001s0638 1.0kb downstream 1.0kb downstream 2547 true scaffold_1: 2236439-2238985 Capsella rubella
Carub.0001s0638 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 2236439-2237438 Capsella rubella
Carub.0001s0638 2.0kb upstream 2.0kb upstream 3547 true scaffold_1: 2237439-2240985 Capsella rubella
Carub.0001s0638 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 2238986-2240985 Capsella rubella
Carub.0001s0638 2.0kb downstream 2.0kb downstream 3547 true scaffold_1: 2235439-2238985 Capsella rubella
Carub.0001s0638 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 2235439-2237438 Capsella rubella
Carub.0001s0638 5.0kb upstream 5.0kb upstream 6547 true scaffold_1: 2237439-2243985 Capsella rubella
Carub.0001s0638 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 2238986-2243985 Capsella rubella
Carub.0001s0638 5.0kb downstream 5.0kb downstream 6547 true scaffold_1: 2232439-2238985 Capsella rubella
Carub.0001s0638 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 2232439-2237438 Capsella rubella
Carub.0001s0638 10.0kb upstream 10.0kb upstream 11547 true scaffold_1: 2237439-2248985 Capsella rubella
Carub.0001s0638 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 2238986-2248985 Capsella rubella
Carub.0001s0638 10.0kb downstream 10.0kb downstream 11547 true scaffold_1: 2227439-2238985 Capsella rubella
Carub.0001s0638 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 2227439-2237438 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372590 5261 Brassicaceae View MSA
123839998 5264 Brassicales-Malvales View MSA
124349732 5266 SBM View MSA
124237471 5268 Malvidae View MSA
124067272 5270 Rosid View MSA
123741885 5271 Pentapetalae View MSA
122789357 5272 Eudicot View MSA
122049887 5273 Angiosperm View MSA
121351474 5274 Embryophyte View MSA
123382179 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain