Gene : Carub.0001s0412 C. rubella v1.1
Defline:  (1 of 1) PTHR13711:SF213 - PROTEIN HMG-20 Genomic Order:  412
Name:  ? Carub.0001s0412 Secondary Identifier:  ? PAC:39230851
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s0412 0.5kb upstream 0.5kb upstream 3358 true scaffold_1: 1452812-1456169 Capsella rubella
Carub.0001s0412 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 1455670-1456169 Capsella rubella
Carub.0001s0412 0.5kb downstream 0.5kb downstream 3358 true scaffold_1: 1452312-1455669 Capsella rubella
Carub.0001s0412 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 1452312-1452811 Capsella rubella
Carub.0001s0412 1.0kb upstream 1.0kb upstream 3858 true scaffold_1: 1452812-1456669 Capsella rubella
Carub.0001s0412 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 1455670-1456669 Capsella rubella
Carub.0001s0412 1.0kb downstream 1.0kb downstream 3858 true scaffold_1: 1451812-1455669 Capsella rubella
Carub.0001s0412 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 1451812-1452811 Capsella rubella
Carub.0001s0412 2.0kb upstream 2.0kb upstream 4858 true scaffold_1: 1452812-1457669 Capsella rubella
Carub.0001s0412 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 1455670-1457669 Capsella rubella
Carub.0001s0412 2.0kb downstream 2.0kb downstream 4858 true scaffold_1: 1450812-1455669 Capsella rubella
Carub.0001s0412 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 1450812-1452811 Capsella rubella
Carub.0001s0412 5.0kb upstream 5.0kb upstream 7858 true scaffold_1: 1452812-1460669 Capsella rubella
Carub.0001s0412 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 1455670-1460669 Capsella rubella
Carub.0001s0412 5.0kb downstream 5.0kb downstream 7858 true scaffold_1: 1447812-1455669 Capsella rubella
Carub.0001s0412 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 1447812-1452811 Capsella rubella
Carub.0001s0412 10.0kb upstream 10.0kb upstream 12858 true scaffold_1: 1452812-1465669 Capsella rubella
Carub.0001s0412 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 1455670-1465669 Capsella rubella
Carub.0001s0412 10.0kb downstream 10.0kb downstream 12858 true scaffold_1: 1442812-1455669 Capsella rubella
Carub.0001s0412 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 1442812-1452811 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366364 5261 Brassicaceae View MSA
123831088 5264 Brassicales-Malvales View MSA
124336981 5266 SBM View MSA
124249645 5268 Malvidae View MSA
124071278 5270 Rosid View MSA
123745117 5271 Pentapetalae View MSA
122793766 5272 Eudicot View MSA
122048952 5273 Angiosperm View MSA
121343849 5274 Embryophyte View MSA
123424352 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain