Gene : Carub.0001s0416 C. rubella v1.1
Defline:  (1 of 1) PTHR12526:SF360 - SUCROSE-PHOSPHATE SYNTHASE 3-RELATED Genomic Order:  416
Name:  ? Carub.0001s0416 Secondary Identifier:  ? PAC:39231688
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-7238 Capsella rubella pathologic  
Crubella SUCSYN-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s0416 0.5kb upstream 0.5kb upstream 7817 true scaffold_1: 1469003-1476819 Capsella rubella
Carub.0001s0416 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 1476320-1476819 Capsella rubella
Carub.0001s0416 0.5kb downstream 0.5kb downstream 7817 true scaffold_1: 1468503-1476319 Capsella rubella
Carub.0001s0416 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 1468503-1469002 Capsella rubella
Carub.0001s0416 1.0kb upstream 1.0kb upstream 8317 true scaffold_1: 1469003-1477319 Capsella rubella
Carub.0001s0416 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 1476320-1477319 Capsella rubella
Carub.0001s0416 1.0kb downstream 1.0kb downstream 8317 true scaffold_1: 1468003-1476319 Capsella rubella
Carub.0001s0416 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 1468003-1469002 Capsella rubella
Carub.0001s0416 2.0kb upstream 2.0kb upstream 9317 true scaffold_1: 1469003-1478319 Capsella rubella
Carub.0001s0416 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 1476320-1478319 Capsella rubella
Carub.0001s0416 2.0kb downstream 2.0kb downstream 9317 true scaffold_1: 1467003-1476319 Capsella rubella
Carub.0001s0416 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 1467003-1469002 Capsella rubella
Carub.0001s0416 5.0kb upstream 5.0kb upstream 12317 true scaffold_1: 1469003-1481319 Capsella rubella
Carub.0001s0416 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 1476320-1481319 Capsella rubella
Carub.0001s0416 5.0kb downstream 5.0kb downstream 12317 true scaffold_1: 1464003-1476319 Capsella rubella
Carub.0001s0416 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 1464003-1469002 Capsella rubella
Carub.0001s0416 10.0kb upstream 10.0kb upstream 17317 true scaffold_1: 1469003-1486319 Capsella rubella
Carub.0001s0416 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 1476320-1486319 Capsella rubella
Carub.0001s0416 10.0kb downstream 10.0kb downstream 17317 true scaffold_1: 1459003-1476319 Capsella rubella
Carub.0001s0416 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 1459003-1469002 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366462 5261 Brassicaceae View MSA
123832824 5264 Brassicales-Malvales View MSA
124340203 5266 SBM View MSA
124237932 5268 Malvidae View MSA
124060783 5270 Rosid View MSA
123737048 5271 Pentapetalae View MSA
122785600 5272 Eudicot View MSA
122049216 5273 Angiosperm View MSA
121347172 5274 Embryophyte View MSA
123427859 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain