Gene : Carub.0001s0539 C. rubella v1.1
Defline:  (1 of 4) KOG2659 - LisH motif-containing protein Genomic Order:  539
Name:  ? Carub.0001s0539 Secondary Identifier:  ? PAC:39231378
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s0539 0.5kb upstream 0.5kb upstream 2904 true scaffold_1: 1903678-1906581 Capsella rubella
Carub.0001s0539 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 1903678-1904177 Capsella rubella
Carub.0001s0539 0.5kb downstream 0.5kb downstream 2904 true scaffold_1: 1904178-1907081 Capsella rubella
Carub.0001s0539 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 1906582-1907081 Capsella rubella
Carub.0001s0539 1.0kb upstream 1.0kb upstream 3404 true scaffold_1: 1903178-1906581 Capsella rubella
Carub.0001s0539 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 1903178-1904177 Capsella rubella
Carub.0001s0539 1.0kb downstream 1.0kb downstream 3404 true scaffold_1: 1904178-1907581 Capsella rubella
Carub.0001s0539 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 1906582-1907581 Capsella rubella
Carub.0001s0539 2.0kb upstream 2.0kb upstream 4404 true scaffold_1: 1902178-1906581 Capsella rubella
Carub.0001s0539 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 1902178-1904177 Capsella rubella
Carub.0001s0539 2.0kb downstream 2.0kb downstream 4404 true scaffold_1: 1904178-1908581 Capsella rubella
Carub.0001s0539 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 1906582-1908581 Capsella rubella
Carub.0001s0539 5.0kb upstream 5.0kb upstream 7404 true scaffold_1: 1899178-1906581 Capsella rubella
Carub.0001s0539 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 1899178-1904177 Capsella rubella
Carub.0001s0539 5.0kb downstream 5.0kb downstream 7404 true scaffold_1: 1904178-1911581 Capsella rubella
Carub.0001s0539 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 1906582-1911581 Capsella rubella
Carub.0001s0539 10.0kb upstream 10.0kb upstream 12404 true scaffold_1: 1894178-1906581 Capsella rubella
Carub.0001s0539 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 1894178-1904177 Capsella rubella
Carub.0001s0539 10.0kb downstream 10.0kb downstream 12404 true scaffold_1: 1904178-1916581 Capsella rubella
Carub.0001s0539 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 1906582-1916581 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360181 5261 Brassicaceae View MSA
123833357 5264 Brassicales-Malvales View MSA
124343184 5266 SBM View MSA
124237084 5268 Malvidae View MSA
124061222 5270 Rosid View MSA
123749928 5271 Pentapetalae View MSA
122788874 5272 Eudicot View MSA
122047349 5273 Angiosperm View MSA
121347103 5274 Embryophyte View MSA
123424554 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain