Gene : Carub.0001s0110 C. rubella v1.1
Defline:  (1 of 2) PTHR31561//PTHR31561:SF1 - FAMILY NOT NAMED // 3-KETOACYL-COA SYNTHASE 1-RELATED Genomic Order:  110
Name:  ? Carub.0001s0110 Secondary Identifier:  ? PAC:39229602
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Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-5080 Capsella rubella pathologic  
Crubella PWY-6433 Capsella rubella pathologic  
Crubella PWY-6598 Capsella rubella pathologic  
Crubella PWY-7036 Capsella rubella pathologic  
Crubella PWY-7601 Capsella rubella pathologic  
Crubella PWY-7606 Capsella rubella pathologic  
Crubella PWY-7619 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s0110 0.5kb upstream 0.5kb upstream 2394 true scaffold_1: 384034-386427 Capsella rubella
Carub.0001s0110 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 384034-384533 Capsella rubella
Carub.0001s0110 0.5kb downstream 0.5kb downstream 2394 true scaffold_1: 384534-386927 Capsella rubella
Carub.0001s0110 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 386428-386927 Capsella rubella
Carub.0001s0110 1.0kb upstream 1.0kb upstream 2894 true scaffold_1: 383534-386427 Capsella rubella
Carub.0001s0110 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 383534-384533 Capsella rubella
Carub.0001s0110 1.0kb downstream 1.0kb downstream 2894 true scaffold_1: 384534-387427 Capsella rubella
Carub.0001s0110 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 386428-387427 Capsella rubella
Carub.0001s0110 2.0kb upstream 2.0kb upstream 3894 true scaffold_1: 382534-386427 Capsella rubella
Carub.0001s0110 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 382534-384533 Capsella rubella
Carub.0001s0110 2.0kb downstream 2.0kb downstream 3894 true scaffold_1: 384534-388427 Capsella rubella
Carub.0001s0110 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 386428-388427 Capsella rubella
Carub.0001s0110 5.0kb upstream 5.0kb upstream 6894 true scaffold_1: 379534-386427 Capsella rubella
Carub.0001s0110 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 379534-384533 Capsella rubella
Carub.0001s0110 5.0kb downstream 5.0kb downstream 6894 true scaffold_1: 384534-391427 Capsella rubella
Carub.0001s0110 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 386428-391427 Capsella rubella
Carub.0001s0110 10.0kb upstream 10.0kb upstream 11894 true scaffold_1: 374534-386427 Capsella rubella
Carub.0001s0110 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 374534-384533 Capsella rubella
Carub.0001s0110 10.0kb downstream 10.0kb downstream 11894 true scaffold_1: 384534-396427 Capsella rubella
Carub.0001s0110 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 386428-396427 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372811 5261 Brassicaceae View MSA
123836168 5264 Brassicales-Malvales View MSA
124350063 5266 SBM View MSA
124238409 5268 Malvidae View MSA
124063458 5270 Rosid View MSA
123736386 5271 Pentapetalae View MSA
122785995 5272 Eudicot View MSA
122048379 5273 Angiosperm View MSA
121310944 5274 Embryophyte View MSA
123348313 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain