Gene : Carub.0001s0113 C. rubella v1.1
Defline:  (1 of 1) PTHR11516:SF25 - PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT ALPHA-3, CHLOROPLASTIC Genomic Order:  113
Name:  ? Carub.0001s0113 Secondary Identifier:  ? PAC:39231204
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-5173 Capsella rubella pathologic  
Crubella PWY-5464 Capsella rubella pathologic  
Crubella PYRUVDEHYD-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s0113 0.5kb upstream 0.5kb upstream 2463 true scaffold_1: 394898-397360 Capsella rubella
Carub.0001s0113 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 394898-395397 Capsella rubella
Carub.0001s0113 0.5kb downstream 0.5kb downstream 2463 true scaffold_1: 395398-397860 Capsella rubella
Carub.0001s0113 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 397361-397860 Capsella rubella
Carub.0001s0113 1.0kb upstream 1.0kb upstream 2963 true scaffold_1: 394398-397360 Capsella rubella
Carub.0001s0113 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 394398-395397 Capsella rubella
Carub.0001s0113 1.0kb downstream 1.0kb downstream 2963 true scaffold_1: 395398-398360 Capsella rubella
Carub.0001s0113 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 397361-398360 Capsella rubella
Carub.0001s0113 2.0kb upstream 2.0kb upstream 3963 true scaffold_1: 393398-397360 Capsella rubella
Carub.0001s0113 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 393398-395397 Capsella rubella
Carub.0001s0113 2.0kb downstream 2.0kb downstream 3963 true scaffold_1: 395398-399360 Capsella rubella
Carub.0001s0113 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 397361-399360 Capsella rubella
Carub.0001s0113 5.0kb upstream 5.0kb upstream 6963 true scaffold_1: 390398-397360 Capsella rubella
Carub.0001s0113 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 390398-395397 Capsella rubella
Carub.0001s0113 5.0kb downstream 5.0kb downstream 6963 true scaffold_1: 395398-402360 Capsella rubella
Carub.0001s0113 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 397361-402360 Capsella rubella
Carub.0001s0113 10.0kb upstream 10.0kb upstream 11963 true scaffold_1: 385398-397360 Capsella rubella
Carub.0001s0113 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 385398-395397 Capsella rubella
Carub.0001s0113 10.0kb downstream 10.0kb downstream 11963 true scaffold_1: 395398-407360 Capsella rubella
Carub.0001s0113 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 397361-407360 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375294 5261 Brassicaceae View MSA
123835447 5264 Brassicales-Malvales View MSA
124343284 5266 SBM View MSA
124241416 5268 Malvidae View MSA
124066481 5270 Rosid View MSA
123745685 5271 Pentapetalae View MSA
122791580 5272 Eudicot View MSA
122044804 5273 Angiosperm View MSA
121347425 5274 Embryophyte View MSA
123423942 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain